View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_27 (Length: 369)

Name: NF14234_low_27
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_27
NF14234_low_27
[»] chr1 (24 HSPs)
chr1 (21-354)||(24645756-24646088)
chr1 (26-105)||(4773957-4774037)
chr1 (26-105)||(6802185-6802265)
chr1 (26-105)||(49898365-49898445)
chr1 (26-105)||(27460646-27460726)
chr1 (26-97)||(44238944-44239016)
chr1 (26-88)||(14727285-14727348)
chr1 (26-88)||(31844717-31844780)
chr1 (26-95)||(4642155-4642225)
chr1 (26-86)||(25011621-25011682)
chr1 (26-88)||(6331641-6331704)
chr1 (26-88)||(9527012-9527075)
chr1 (26-88)||(25007431-25007494)
chr1 (26-88)||(37154075-37154138)
chr1 (170-263)||(29457533-29457626)
chr1 (26-88)||(8239246-8239309)
chr1 (26-88)||(27584098-27584161)
chr1 (26-84)||(33469026-33469085)
chr1 (26-83)||(48940513-48940571)
chr1 (28-97)||(24745361-24745430)
chr1 (182-222)||(8320280-8320320)
chr1 (26-88)||(44305379-44305442)
chr1 (56-105)||(4163392-4163441)
chr1 (56-105)||(41751921-41751970)
[»] chr8 (17 HSPs)
chr8 (156-354)||(2308617-2308811)
chr8 (156-354)||(2313811-2314005)
chr8 (26-105)||(34282982-34283062)
chr8 (155-234)||(25818352-25818431)
chr8 (26-105)||(38214709-38214789)
chr8 (155-234)||(25892815-25892894)
chr8 (26-105)||(27321935-27322015)
chr8 (26-105)||(39431759-39431839)
chr8 (26-88)||(24965000-24965063)
chr8 (26-88)||(28928026-28928089)
chr8 (27-88)||(3384117-3384179)
chr8 (27-85)||(31500927-31500985)
chr8 (56-105)||(12478085-12478134)
chr8 (21-88)||(36406581-36406649)
chr8 (39-95)||(43843136-43843193)
chr8 (26-81)||(13243056-13243112)
chr8 (38-105)||(21138155-21138223)
[»] chr7 (15 HSPs)
chr7 (26-105)||(41759705-41759785)
chr7 (26-102)||(815070-815147)
chr7 (26-102)||(21932863-21932940)
chr7 (26-105)||(5991502-5991582)
chr7 (26-105)||(30852293-30852373)
chr7 (26-105)||(19377333-19377413)
chr7 (26-105)||(22206771-22206851)
chr7 (26-105)||(22227888-22227968)
chr7 (26-97)||(25688275-25688347)
chr7 (26-73)||(3012280-3012328)
chr7 (35-105)||(28694145-28694216)
chr7 (26-88)||(35300525-35300588)
chr7 (27-76)||(7873306-7873356)
chr7 (26-86)||(26723035-26723096)
chr7 (32-76)||(42439665-42439710)
[»] chr2 (16 HSPs)
chr2 (26-105)||(304207-304287)
chr2 (26-89)||(25562890-25562954)
chr2 (26-88)||(13203735-13203798)
chr2 (26-88)||(6799970-6800033)
chr2 (26-88)||(41114954-41115017)
chr2 (29-97)||(2475781-2475850)
chr2 (26-89)||(18299227-18299291)
chr2 (26-97)||(33909426-33909498)
chr2 (32-86)||(17148751-17148806)
chr2 (26-86)||(22572785-22572846)
chr2 (56-105)||(34756630-34756679)
chr2 (182-222)||(22994646-22994686)
chr2 (27-102)||(27702003-27702079)
chr2 (182-234)||(29218585-29218637)
chr2 (182-234)||(29331884-29331936)
chr2 (39-105)||(4570577-4570644)
[»] chr5 (23 HSPs)
chr5 (26-105)||(16567741-16567821)
chr5 (26-105)||(43228728-43228808)
chr5 (21-105)||(13694785-13694870)
chr5 (26-97)||(16667579-16667651)
chr5 (26-105)||(32953753-32953833)
chr5 (27-105)||(37779614-37779693)
chr5 (33-105)||(1672579-1672652)
chr5 (26-86)||(6900742-6900803)
chr5 (26-105)||(21068947-21069027)
chr5 (30-88)||(17192759-17192818)
chr5 (26-103)||(13942868-13942946)
chr5 (21-105)||(13695000-13695085)
chr5 (26-97)||(7162169-7162241)
chr5 (26-97)||(15503874-15503946)
chr5 (56-105)||(37607405-37607454)
chr5 (29-88)||(34846322-34846382)
chr5 (26-88)||(2476371-2476434)
chr5 (26-88)||(34443933-34443996)
chr5 (27-88)||(30248932-30248994)
chr5 (26-102)||(36234656-36234733)
chr5 (182-222)||(29736640-29736680)
chr5 (21-103)||(12267490-12267573)
chr5 (26-88)||(33006862-33006925)
[»] chr4 (26 HSPs)
chr4 (26-105)||(32828166-32828246)
chr4 (26-105)||(50383839-50383919)
chr4 (27-102)||(11827112-11827188)
chr4 (26-97)||(41972522-41972594)
chr4 (27-105)||(6017067-6017146)
chr4 (27-105)||(9694038-9694117)
chr4 (26-103)||(15034558-15034636)
chr4 (26-88)||(2017522-2017585)
chr4 (26-88)||(4552153-4552216)
chr4 (31-105)||(25237515-25237590)
chr4 (27-97)||(52373697-52373768)
chr4 (27-88)||(2576127-2576189)
chr4 (27-88)||(46645559-46645621)
chr4 (26-97)||(8901762-8901834)
chr4 (26-88)||(1585677-1585740)
chr4 (26-88)||(31364103-31364166)
chr4 (26-88)||(32005882-32005945)
chr4 (27-80)||(50099816-50099870)
chr4 (26-88)||(10715622-10715686)
chr4 (26-88)||(10929392-10929456)
chr4 (182-222)||(28402581-28402621)
chr4 (26-97)||(49744998-49745070)
chr4 (26-76)||(4728526-4728577)
chr4 (27-105)||(9003507-9003586)
chr4 (26-97)||(14044304-14044376)
chr4 (26-85)||(40969195-40969255)
[»] scaffold0638 (1 HSPs)
scaffold0638 (26-102)||(4052-4129)
[»] chr3 (18 HSPs)
chr3 (26-105)||(53987820-53987900)
chr3 (26-105)||(41218468-41218548)
chr3 (26-103)||(33179209-33179287)
chr3 (26-90)||(7500915-7500980)
chr3 (26-105)||(26278307-26278387)
chr3 (26-88)||(53651871-53651934)
chr3 (26-87)||(44047558-44047620)
chr3 (26-86)||(12909795-12909856)
chr3 (26-105)||(9600306-9600386)
chr3 (26-85)||(43700239-43700299)
chr3 (26-88)||(25391909-25391972)
chr3 (26-88)||(37516603-37516666)
chr3 (26-88)||(44625671-44625734)
chr3 (182-222)||(493588-493628)
chr3 (26-105)||(41358712-41358792)
chr3 (26-88)||(14461038-14461101)
chr3 (26-88)||(28311250-28311313)
chr3 (56-105)||(54846006-54846055)
[»] scaffold0075 (2 HSPs)
scaffold0075 (26-105)||(6861-6941)
scaffold0075 (34-88)||(11492-11547)
[»] chr6 (15 HSPs)
chr6 (26-105)||(34188741-34188821)
chr6 (26-88)||(34249098-34249161)
chr6 (21-105)||(339286-339371)
chr6 (26-97)||(2960643-2960715)
chr6 (26-105)||(28614468-28614548)
chr6 (26-88)||(10397877-10397940)
chr6 (56-105)||(5582426-5582475)
chr6 (170-263)||(34763600-34763693)
chr6 (27-105)||(14938996-14939075)
chr6 (27-76)||(2836298-2836348)
chr6 (21-76)||(1781102-1781158)
chr6 (26-88)||(23663844-23663907)
chr6 (26-86)||(9047012-9047073)
chr6 (177-234)||(20602888-20602945)
chr6 (26-93)||(15528897-15528965)
[»] scaffold0021 (1 HSPs)
scaffold0021 (21-105)||(109391-109476)
[»] scaffold1235 (1 HSPs)
scaffold1235 (182-222)||(2070-2110)
[»] scaffold0108 (1 HSPs)
scaffold0108 (61-105)||(21119-21163)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 24646088 - 24645756
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagctnnnnnnnntggctcc 120  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||        |||||||    
T  24646088 cacaggaaaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagcctgagctagtgtccatgctagctgggggg--tggctcc 24645991  T
Q  121 gccccttactcaggtcactactagcagnnnnnnn-ctgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaa 219  Q
    |||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24645990 gcccctgactcaggtcactactagcagaactcaaactgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaa 24645891  T
Q  220 tccggttatgcatgccatatataaacacattgagatagacgttcgttcactacatacgtgatcaggtccttcaaaatgaaatcacagttgcctgtgttcc 319  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  24645890 tccggttatgcatgccagatataaacacattgagatagacgttcgttcactacatacgtgatcaggtccttcaaaatgaagtcacagttgcctatgttcc 24645791  T
Q  320 ttctgcagatcaaatcgcagactgcctgaccaaag 354  Q
    ||||||||||||||| ||||||| |||||||||||    
T  24645790 ttctgcagatcaaattgcagactacctgaccaaag 24645756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 4774037 - 4773957
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | |||||||||| ||| ||||||||||| ||||||||||||||| |||||||    
T  4774037 gaaaagctaaaagttctagtaatggctgggcttgctacaaaaaaaattggagttgagtctgggctagtgcccaggctagct 4773957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 6802185 - 6802265
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||| | ||||||||||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  6802185 gaaaagcgagaagttctagtaatggctgagcttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagct 6802265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 49898445 - 49898365
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| |||||||||||| |||  ||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  49898445 gaaaagctaaaacttctagtaatggctgaacttgttacaaagaaagttggagctgagcctgggctagtgcccaggctagct 49898365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 27460726 - 27460646
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||    |||||||||||||    
T  27460726 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggcactagcccatgctagct 27460646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 44238944 - 44239016
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||||| |||||||||||| || | || |||||||||||||||||| ||||||||||||||||||||    
T  44238944 gaaaagctaaaatttctagtaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgccca 44239016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 14727348 - 14727285
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  14727348 gaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggagctgagcctgggc 14727285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 31844717 - 31844780
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  31844717 gaaaagctaaaatttctagtaatggttgggtttgctagaaagaaagttggagttgagcctgggc 31844780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 4642155 - 4642225
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcc 95  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||| |||| ||||||||| ||||||||    
T  4642155 gaaaagctaaaagttctagtaatggctgaacttgctacaaagaaagtcggagctgagcctggactagtgcc 4642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 25011621 - 25011682
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 86  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  25011621 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgg 25011682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 6331704 - 6331641
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||||||||  ||||||||||    
T  6331704 gaaaagctaaaatttctagtaatggttgagtttgctacatagaaagttggagccgagcctgggc 6331641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 9527075 - 9527012
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| || ||||||||    
T  9527075 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgggcctgggc 9527012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 25007494 - 25007431
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  25007494 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 25007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 37154075 - 37154138
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| ||| || |||||||||||||||||| |||||||||||    
T  37154075 gaaaagctaaaaattctagtaatggtagagcttcctacaaagaaagttggagctgagcctgggc 37154138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 29457626 - 29457533
Alignment:
Q  170 aagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccatatataaacacattgagatagacgttc 263  Q
    |||||| | |||||||||||||||||||||||||||||||| || || |||||  |||||||||| |  |  ||||||||||| ||||| ||||    
T  29457626 aagccaatattgtggtgtgataacttgagtgctaaggcacttgcatcaaatcctattatgcatgctaggtccaaacacattgaaatagatgttc 29457533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 8239309 - 8239246
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | || |||||||||||||||||| |||||||||||    
T  8239309 gaaaagctaaaaattctagtaatggtagggattactacaaagaaagttggagctgagcctgggc 8239246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 27584098 - 27584161
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||  | |||||||||||||||||||||  ||||||||||    
T  27584098 gaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggagccgagcctgggc 27584161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 33469026 - 33469085
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcct 84  Q
    |||||||||||| ||||||||||||||| | |||||| |||||||||||||| |||||||    
T  33469026 gaaaagctaaaatttctagtaatggttgaatttgctataaagaaagttggagctgagcct 33469085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 48940513 - 48940571
Alignment:
Q  26 gaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcc 83  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| ||||||| ||||||    
T  48940513 gaaaagctaaaagttctagtaatggcttggcttgctacaaagaatgttggagctgagcc 48940571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 24745430 - 24745361
Alignment:
Q  28 aaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||| |||||||||| | | || || ||||||||||||||||| |||| |||||||||| ||||    
T  24745430 aaagctaaaaattctagtaatagctcagctgttacaaagaaagttggagctgagactgggctagtaccca 24745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 8320320 - 8320280
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatcc 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  8320320 tggtgtgataacttgagtgccaaggcactagcttctaatcc 8320280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 44305442 - 44305379
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| |||||||||| || | | || |||||||||||||||||| |||||||||||    
T  44305442 gaaaagctaaaaattctagtaattgtagggcttcctacaaagaaagttggagctgagcctgggc 44305379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 4163441 - 4163392
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||| |||||||||||||| | | |||||||||||||||| |||||||    
T  4163441 ttgctataaagaaagttggagctaaacctgggctagtgcccaggctagct 4163392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 41751970 - 41751921
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||| | ||||| | ||||||||||||||| |||||||    
T  41751970 ttgctacaaagaaagtagaagttgcgtctgggctagtgcccaggctagct 41751921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 156 - 354
Target Start/End: Original strand, 2308617 - 2308811
Alignment:
Q  156 tgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccatatataaacacattgagat 255  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  2308617 tgccaatacatagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccaggtctaaacacattgagat 2308716  T
Q  256 agacgttcgttcactacatacgtgatcaggtccttcaaaatgaaatcacagttgcctgtgttccttctgcagatcaaatcgcagactgcctgaccaaag 354  Q
    |||    ||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||| ||||||||||| |||||||    
T  2308717 aga----cgttcactacatacgtgatcaggtccttcaaaatgaagtcgcagttgcttatgttccttctgcagatcaaattgcagactgcctaaccaaag 2308811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 156 - 354
Target Start/End: Original strand, 2313811 - 2314005
Alignment:
Q  156 tgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccatatataaacacattgagat 255  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  2313811 tgccaatacatagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccaggtctaaacacattgagat 2313910  T
Q  256 agacgttcgttcactacatacgtgatcaggtccttcaaaatgaaatcacagttgcctgtgttccttctgcagatcaaatcgcagactgcctgaccaaag 354  Q
    |||    ||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||| ||||||||||| |||||||    
T  2313911 aga----cgttcactacatacgtgatcaggtccttcaaaatgaagtcgcagttgcttatgttccttctgcagatcaaattgcagactgcctaaccaaag 2314005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 34282982 - 34283062
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||  || | ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  34282982 gaaaagctaaaagttctagtaatgactggacttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagct 34283062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 25818352 - 25818431
Alignment:
Q  155 ctgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgc 234  Q
    |||||| ||| |||||| ||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  25818352 ctgccattaccaagaaaaccaattttgtggtgtgataacttaagtgctaaggcacttgcatccaatccggttatgcatgc 25818431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 38214789 - 38214709
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||| ||| || | |||||||||||||| |||||| |||||| ||||||||||||| |||||||    
T  38214789 gaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcccgggctagtgcccaggctagct 38214709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 25892894 - 25892815
Alignment:
Q  155 ctgccaatacaaagaaagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgc 234  Q
    |||||| ||| |||||| ||| |  |||||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  25892894 ctgccattaccaagaaaaccaatcatgtggtgtgataacttaagtgctaaggcacttgcatccaatccggttatgcatgc 25892815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 27321935 - 27322015
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||| ||||||||| ||||||||| || | |||||||||||||| |||||| ||||||||||| |||||||| |||||||    
T  27321935 gaaaaactaaaagttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggcaagtgcccaggctagct 27322015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 39431759 - 39431839
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||| |||||| |  | | ||||||||||||||||||||| |||||| ||||||||||||| |||||||    
T  39431759 gaaaagctaaaagttcaagtaattgaagggtttgctacaaagaaagttggagctgagcccgggctagtgcccaggctagct 39431839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 24965063 - 24965000
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  24965063 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggc 24965000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 28928089 - 28928026
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||  | |||||||||||||||||||||  ||||||||||    
T  28928089 gaaaagctaaaaattctagtaatggttaggcttgctacaaagaaagttggagccgagcctgggc 28928026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 3384117 - 3384179
Alignment:
Q  27 aaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||| ||||| ||||||| | | ||||||||||||||||||||| |||||||||||    
T  3384117 aaaagctaaaaattctaataatggtaggacttgctacaaagaaagttggagctgagcctgggc 3384179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 31500927 - 31500985
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgagttgctacaaagaaagttggagttgagcctg 85  Q
    ||||||||||| || |||||||||  ||| |||||||||||||||||||| ||||||||    
T  31500927 aaaagctaaaaattttagtaatggcggagctgctacaaagaaagttggagctgagcctg 31500985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 12478134 - 12478085
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||| | |||||| |||||||||||||||| |||||||    
T  12478134 ttgctacaaagaaagtagaagttgatcctgggctagtgcccaggctagct 12478085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 36406581 - 36406649
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||| |||||||||||| || |||||||| ||| | |||||||||||||||||||||  ||||||||||    
T  36406581 cacaggaaaagctaaaaattatagtaatgtttgggcttgctacaaagaaagttggagccgagcctgggc 36406649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 43843193 - 43843136
Alignment:
Q  39 ttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcc 95  Q
    |||||||||||| |||  |||||||||||||||| | ||||||||| |||||||||||    
T  43843193 ttctagtaatggctgaccttgctacaaagaaagtagaagttgagcccgggctagtgcc 43843136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 13243112 - 13243056
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgag 81  Q
    |||||||||||||||||| |||||| || | |||||||||| |||||||||| ||||    
T  13243112 gaaaagctaaaagttctaataatggctgggcttgctacaaaaaaagttggaggtgag 13243056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 21138155 - 21138223
Alignment:
Q  38 gttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||  | |||||||||||||||| | || ||||||||| ||| |||| |||||||||    
T  21138155 gttctagtaatggttaggcttgctacaaagaaagtagaagctgagcctggactaatgcctatgctagct 21138223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 41759705 - 41759785
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  41759705 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggctagtgcccaggctagct 41759785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 815070 - 815147
Alignment:
Q  26 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 102  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  815070 gaaaagctaaaagttctagtaatggctagatttgctacaaagaaagttggagctgagcctgggctagtgcccaggcta 815147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 21932863 - 21932940
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 102  Q
    |||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  21932863 gaaaagttaaaagttttagtaatggttgggcttgctacaaagaaagttggagttgagcctgggctagtgcccaggcta 21932940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 5991502 - 5991582
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||| ||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  5991502 gaaaaactaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagcctgggctagtgcccaggctagct 5991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 30852373 - 30852293
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||| |||||||||||||||||| |||| || ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  30852373 gaaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcccaggctagct 30852293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 19377413 - 19377333
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||| ||||| | |||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  19377413 gaaaagttaaaactactagtaatggctggagttgttacaaagaaagttggagctgagcctgggctagtgcccaagctagct 19377333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 22206771 - 22206851
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| || ||||||||  || | |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  22206771 gaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagct 22206851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 22227968 - 22227888
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| || ||||||||  || | |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  22227968 gaaaagctaaaaattatagtaatgcctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagct 22227888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 25688275 - 25688347
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||| |||||| |||| |||||||||| ||||    
T  25688275 gaaaagctaaaagttttagtaatggctgagcttgctacaaagaaaattggagctgagtctgggctagtaccca 25688347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 3012328 - 3012280
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttg 73  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  3012328 gaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttg 3012280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 28694145 - 28694216
Alignment:
Q  35 aaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||  ||  ||||||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  28694145 aaagttctagtaatggcggaacttgctacaaagaaagttggagctgagcctgggttagtgtccaggctagct 28694216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 35300525 - 35300588
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||  ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  35300525 gaaaagctaaacattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 35300588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 7873306 - 7873356
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggag 76  Q
    ||||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  7873306 aaaagctaaaagttctagtaatggttgggcttgctacaaagaaaattggag 7873356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 26723035 - 26723096
Alignment:
Q  26 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgg 86  Q
    |||||||||||| |||||||||||||| || |||||||||| ||||||||||  ||||||||    
T  26723035 gaaaagctaaaatttctagtaatggttggatttgctacaaaaaaagttggagccgagcctgg 26723096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 42439665 - 42439710
Alignment:
Q  32 ctaaaagttctagtaatggttgag-ttgctacaaagaaagttggag 76  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||    
T  42439665 ctaaaagttctagtaatggctgagcatgctacaaagaaagttggag 42439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 304207 - 304287
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  304207 gaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcttgggctagtgcccaagctagct 304287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 25562954 - 25562890
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggct 89  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  25562954 gaaaagctaaaagttctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggct 25562890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 13203798 - 13203735
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  13203798 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagctgagcctgggc 13203735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 6799970 - 6800033
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  6799970 gaaaagttaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggc 6800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 41114954 - 41115017
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||||||||||  ||||||||||    
T  41114954 gaaaaactaaaaattctagtaatggttgagcttgctacaaagaaagttggagccgagcctgggc 41115017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 2475850 - 2475781
Alignment:
Q  29 aagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||||||||||||||| || | || |||||||||||||||||| |||| |||| ||||||||||    
T  2475850 aagctaaaagttctagtaatggctgggcttcctacaaagaaagttggagctgagtctggactagtgccca 2475781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 18299227 - 18299291
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggct 89  Q
    |||||| ||||| ||||||||||||||| | ||||||||||||||||||||| |||||| |||||    
T  18299227 gaaaagttaaaaattctagtaatggttgggcttgctacaaagaaagttggaggtgagcccgggct 18299291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 33909426 - 33909498
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    ||||| |||||| |||||||||||  |||| ||||||||||||||||||||| | || |||||||||||||||    
T  33909426 gaaaaactaaaaattctagtaatgactgagcttgctacaaagaaagttggagctaagtctgggctagtgccca 33909498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 17148806 - 17148751
Alignment:
Q  32 ctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 86  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||| |||||||||    
T  17148806 ctaaaagttatagtaatggctgagcttgctacaaagaaagttggagctgagcctgg 17148751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 22572785 - 22572846
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 86  Q
    |||||||||||  ||||||||||||||  | ||||||||||||||||||||| |||||||||    
T  22572785 gaaaagctaaatattctagtaatggttaggcttgctacaaagaaagttggagctgagcctgg 22572846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 34756679 - 34756630
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||| | || |||||||||||||||||||| |||||||    
T  34756679 ttgctacaaagaaagtagaagctgagcctgggctagtgcccaggctagct 34756630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 22994646 - 22994686
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatcc 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  22994646 tggtgtgataacttgagtgccaaggcactagcttctaatcc 22994686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 27702079 - 27702003
Alignment:
Q  27 aaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 102  Q
    ||||||||||| || ||||||||| || | ||| |||| |||||||||||| ||||||| |||||||||||| ||||    
T  27702079 aaaagctaaaacttttagtaatggctggatttgttacagagaaagttggagctgagcctaggctagtgcccaggcta 27702003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 29218637 - 29218585
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgc 234  Q
    |||||||||||||| ||||| |||||||||||||| ||||| || ||||||||    
T  29218637 tggtgtgataacttaagtgccaaggcactagcttcaaatccagtcatgcatgc 29218585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 29331936 - 29331884
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgc 234  Q
    |||||||||||||| ||||| |||||||||||||| ||||| || ||||||||    
T  29331936 tggtgtgataacttaagtgccaaggcactagcttcaaatccagtcatgcatgc 29331884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 4570577 - 4570644
Alignment:
Q  39 ttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| || | || ||||||||||||| | || | ||||||||||||||||||||||||||    
T  4570577 ttctagtaatggctgggcttactacaaagaaagtagaagctcagcctgggctagtgcccatgctagct 4570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 16567821 - 16567741
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||| |||||||    
T  16567821 gaaaagctaaaagttctagtaatggctggacttgctacaaagaaaattggagctgagcctgggctagtgcccaggctagct 16567741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 43228728 - 43228808
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  43228728 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagttgagccttggctagtgcccaggctagct 43228808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 13694870 - 13694785
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| ||||||| | ||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  13694870 cacaggaaaagcgagaagttctagtaatggatgggcttgctacaaagaaagttgaagttgagcctgggctagtgcccaggctagct 13694785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 16667579 - 16667651
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| |||| |||||||||||||||    
T  16667579 gaaaagctaaaagttctagtaatggctggacttgctacaaagaaagttggagctgagtctgggctagtgccca 16667651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 32953753 - 32953833
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||| ||||||| |||||||||||| |||||||    
T  32953753 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctcggctagtgcccaggctagct 32953833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 37779693 - 37779614
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| ||||||||||||||||||| |||  |||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  37779693 aaaaactaaaagttctagtaatggctgaacttgctacaaagaaaattggagttgagcctggactagtgcccaggctagct 37779614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 1672579 - 1672652
Alignment:
Q  33 taaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||| | |||||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  1672579 taaaagttctagtaatggttgggattgctacaaagaaaattggagctgagcctgagctagtgcccaggctagct 1672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 6900803 - 6900742
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 86  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  6900803 gaaaagctaaaagttctagtaatggctgagcttgctacaaagaaagttggagttgaggctgg 6900742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 21069027 - 21068947
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| ||||||| ||||||||||||||| | || |||||||||||||| |||||||||||| ||||||||||| |||||||    
T  21069027 gaaaggctaaaaattctagtaatggttgggcttactacaaagaaagttagagttgagcctgagctagtgcccaggctagct 21068947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 17192759 - 17192818
Alignment:
Q  30 agctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  17192759 agctaaaagttctagtaatggctgagcttgctacaaagaaagttggagctgagcctgggc 17192818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 13942868 - 13942946
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctag 103  Q
    |||||||| ||||||||||||| || || ||| ||||||||||||||||||  |||||||||||||||||||| |||||    
T  13942868 gaaaagctcaaagttctagtaaaggctgggtttgctacaaagaaagttggacctgagcctgggctagtgcccaggctag 13942946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 13695085 - 13695000
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| ||||||| | ||||||||||||||| |||  |||||||||||||||||| || |||||||| ||||||||||| |||||||    
T  13695085 cacaggaaaagcgagaagttctagtaatggatgaacttgctacaaagaaagttgaagctgagcctgagctagtgcccaggctagct 13695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 7162169 - 7162241
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||||| || ||||||||| || | |||||||||||||| |||||| ||||||||||||||||||||    
T  7162169 gaaaagctaaaatttttagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgccca 7162241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 15503946 - 15503874
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||||| ||||||||||||||  | |||||||||||||| ||| || ||||||||||||||||||||    
T  15503946 gaaaagctaaaaattctagtaatggttaggcttgctacaaagaaatttgaaggtgagcctgggctagtgccca 15503874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 37607454 - 37607405
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  37607454 ttgctacaaagaaaattggagttgagcctggactagtgcccaggctagct 37607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 34846382 - 34846322
Alignment:
Q  29 aagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||||  ||||||||||    
T  34846382 aagctaaaaattctagtaatggtttgacttgctacaaagaaagttggagccgagcctgggc 34846322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 2476434 - 2476371
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | |||||||||||||| |||||| |||||||||||    
T  2476434 gaaaagctaaaaattctagtaatggtaggacttgctacaaagaaaattggagctgagcctgggc 2476371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 34443996 - 34443933
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||| || ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  34443996 gaaaagctacaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 34443933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 30248994 - 30248932
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||| |||||||||| |||| | |||||||||||||||||||||  ||||||||||    
T  30248994 aaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggc 30248932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 36234656 - 36234733
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 102  Q
    |||||| ||||||||||| |||||| || | |||||||||||||| |||||| |||| ||||||||||| ||| ||||    
T  36234656 gaaaagttaaaagttctaataatggctgggcttgctacaaagaaaattggagctgagtctgggctagtgtccaggcta 36234733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 29736680 - 29736640
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatcc 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  29736680 tggtgtgataacttgagtgccaaggcactagcttctaatcc 29736640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 12267490 - 12267573
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctag 103  Q
    |||| ||||||||||||||||||||||| | |  | ||||||||||||||||||||| | ||||| |  ||||||||| |||||    
T  12267490 cacaggaaaagctaaaagttctagtaattgctaggcttgctacaaagaaagttggagctaagcctagattagtgcccaagctag 12267573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 33006925 - 33006862
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||||  | |||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  33006925 gaaaagctaaaaaatttagtaatggttgggtttgctacaaagaaagttggagccgagcctgggc 33006862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 32828246 - 32828166
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||||||||||||||| | || ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  32828246 gaaaagctaaaagttctagtaatggttgggattactacaaagaaaattggagctgagcctgggctagtgcccaggctagct 32828166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 50383919 - 50383839
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  50383919 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctgggccagtgcccaggctagct 50383839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 11827112 - 11827188
Alignment:
Q  27 aaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 102  Q
    |||||||||||||||||||||||| | || || ||||||||||| |||||| ||||||||||||||| |||||||||    
T  11827112 aaaagctaaaagttctagtaatggctagacttactacaaagaaaattggagctgagcctgggctagtacccatgcta 11827188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 41972522 - 41972594
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||| |||||||  |||||||||||    
T  41972522 gaaaagctaaaagttctagtaatggttcggcttgctacaaagaaagttggagctgagcctaagctagtgccca 41972594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 6017146 - 6017067
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||| | ||||||||||||| || | | |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  6017146 aaaagcgacaagttctagtaatagtcgggcttgctacaaagaaagtagaagttgagcctgggctagtgcccatgctagct 6017067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 9694117 - 9694038
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||| |||||||||||||||||| |||| || ||||||||||| |||||| ||||||||||||||||| || |||||||    
T  9694117 aaaagttaaaagttctagtaatggctgagcttactacaaagaaaattggagctgagcctgggctagtgcacaggctagct 9694038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 15034558 - 15034636
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctag 103  Q
    ||||||| |||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||||||| |||||    
T  15034558 gaaaagcgaaaagttctagtaatggttgggcttgttacaaagaaagttgaagctgagcttgggctagtgcccaggctag 15034636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 2017522 - 2017585
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | |||||||||    
T  2017522 gaaaagctaaaaattctagtaatggtagagcttgctacaaagaaagttggagctaagcctgggc 2017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 4552216 - 4552153
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  4552216 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 4552153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 25237590 - 25237515
Alignment:
Q  31 gctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||||||  || | || |||||||||||||||||| ||||||||||||||||| || |||||||    
T  25237590 gctaaaagttctagtaatgactggacttactacaaagaaagttggagctgagcctgggctagtgctcaggctagct 25237515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 52373768 - 52373697
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    ||||| |||||||||||||||||  |||| || ||| |||||||||||||| ||||||||||||||||||||    
T  52373768 aaaagttaaaagttctagtaatgactgagcttactataaagaaagttggagctgagcctgggctagtgccca 52373697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 2576189 - 2576127
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||| |||| |||||||||| | ||||||||||||||||||||| |||||||||||    
T  2576189 aaaagctaaaaattcttgtaatggttgggcttgctacaaagaaagttggagctgagcctgggc 2576127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 46645621 - 46645559
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||||||| |||||||||||    
T  46645621 aaaagctaaaaattctagtaatggttgggcttgctacaaaggaagttggagctgagcctgggc 46645559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 8901834 - 8901762
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||| |||||||||||  ||||| || | || |||||||||||||||||| ||||||||||||||||||||    
T  8901834 gaaaagttaaaagttctaaaaatggctgggctttctacaaagaaagttggagctgagcctgggctagtgccca 8901762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 1585740 - 1585677
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | |||||||||||||||||| || |||||||||||    
T  1585740 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttgaagctgagcctgggc 1585677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 31364166 - 31364103
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||| |||||| ||||||||||||||| | |||||||||||||||||||||  ||||||||||    
T  31364166 gaaaaactaaaatttctagtaatggttggatttgctacaaagaaagttggagccgagcctgggc 31364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 32005945 - 32005882
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||| ||||||| | | ||||||||||||||||||||| |||||||||||    
T  32005945 gaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagctgagcctgggc 32005882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 50099870 - 50099816
Alignment:
Q  27 aaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttga 80  Q
    |||||||||||| |||||||||||||| | || ||||||||||||||||||||||    
T  50099870 aaaagctaaaagctctagtaatggttgaacttactacaaagaaagttggagttga 50099816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 10715686 - 10715622
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgc-tacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||||||||||  ||||||||||    
T  10715686 gaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggc 10715622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 10929456 - 10929392
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgc-tacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||||||||||  ||||||||||    
T  10929456 gaaaagctaaaaattctagtaatggttgggcttgcttacaaagaaagttggagccgagcctgggc 10929392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 28402581 - 28402621
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatcc 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  28402581 tggtgtgataacttgagtgccaaggcactagcttctaatcc 28402621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 49745070 - 49744998
Alignment:
Q  26 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||| ||||| |||||||||||| | || ||| || |||||||||||||| ||||||||| ||||||||||    
T  49745070 gaaaaggtaaaacttctagtaatggctagacttgttataaagaaagttggagctgagcctggactagtgccca 49744998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 4728577 - 4728526
Alignment:
Q  26 gaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggag 76  Q
    |||||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  4728577 gaaaagctaaaaattctagtaatggtttggcttgctacaaagaaagttggag 4728526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 9003586 - 9003507
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||| |||||||||| ||||||  || | |||||||||||||| |||||| ||||||||| |||||||| | |||||||    
T  9003586 aaaagttaaaagttcttgtaatgactgggcttgctacaaagaaaattggagctgagcctggactagtgcctaggctagct 9003507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 14044376 - 14044304
Alignment:
Q  26 gaaaagctaaaagttctagtaatgg-ttgagttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    |||||||||||| || | ||||||| |||  |||||||||||||| |||||| |||| ||| |||||||||||    
T  14044376 gaaaagctaaaaattttcgtaatggcttggcttgctacaaagaaaattggagctgagactgagctagtgccca 14044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 40969255 - 40969195
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctg 85  Q
    |||||||||||| ||||  ||||||||| | |||||||||||||||||| || ||||||||    
T  40969255 gaaaagctaaaaattctcataatggttggacttgctacaaagaaagttgaagctgagcctg 40969195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 4129 - 4052
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgcta 102  Q
    ||||||||||||||||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||| ||||    
T  4129 gaaaagctaaaagttctagtaatggctgggcttgctacaaagaaaattggagctgagcctgggctagtgcccaggcta 4052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 53987900 - 53987820
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgagttg-ctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||||||||||||||||| || ||||||||||| ||| || ||||||||| |||||||||| |||||||    
T  53987900 gaaaagctaaaagttctagtaatggttgagctgactacaaagaaaattgaagctgagcctggactagtgcccaagctagct 53987820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 41218468 - 41218548
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||||||||||||||| || | ||||||||| |||||| |||| ||||||||||||||||| || |||||||    
T  41218468 gaaaagctaaaagttctagtaatggctgggcttgctacaaggaaagtcggagctgagcctgggctagtgctcaggctagct 41218548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 33179209 - 33179287
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgcccatgctag 103  Q
    ||||||||||||||||||||||||| || | |||||||||| |||||||||| |||||||  ||||||||||| |||||    
T  33179209 gaaaagctaaaagttctagtaatggctggacttgctacaaaaaaagttggagctgagcctaagctagtgcccaggctag 33179287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 7500980 - 7500915
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggcta 90  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||  ||||||||||||    
T  7500980 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctgggcta 7500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 26278387 - 26278307
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| |||||||||||| |  | ||||| |||||||| |||||| |||||||||||||||||||| |||||||    
T  26278387 gaaaagctaaaaattctagtaatggctaggcttgctccaaagaaaattggagctgagcctgggctagtgcccaggctagct 26278307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 53651934 - 53651871
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  53651934 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 53651871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 44047620 - 44047558
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctggg 87  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| ||||||||||    
T  44047620 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctggg 44047558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 12909856 - 12909795
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgg 86  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| |||||||||    
T  12909856 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgg 12909795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 9600386 - 9600306
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||| ||||||||||||||||| || | || ||||||||||| | |||| ||||| |||||||||||||| |||||||    
T  9600386 gaaaagccaaaagttctagtaatggctgggattactacaaagaaaataggagctgagcttgggctagtgcccaggctagct 9600306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 43700239 - 43700299
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctg 85  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||  |||||||    
T  43700239 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagccgagcctg 43700299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 25391909 - 25391972
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||| | | ||||||| ||||||||||||| |||||||||||    
T  25391909 gaaaagctaaaaattctagtaatggtagggcttgctacgaagaaagttggagctgagcctgggc 25391972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 37516666 - 37516603
Alignment:
Q  26 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||||||   ||||||||||    
T  37516666 gaaaagctaaaaattctagtaatggttggacttgctacaaagaaagttggaaccgagcctgggc 37516603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 44625734 - 44625671
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| |||||||||| |||| | |||||||||||||||||||||  ||||||||||    
T  44625734 gaaaagctaaaaattctagtaatagttgggcttgctacaaagaaagttggagccgagcctgggc 44625671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 493588 - 493628
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatcc 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  493588 tggtgtgataacttgagtgccaaggcactagcttctaatcc 493628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 41358712 - 41358792
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||| | |||||||| ||||||||||||| |||||||||||||| | || |||| |||| |||| ||||| |||||||    
T  41358712 gaaaagcgagaagttctaataatggttgagtttgctacaaagaaagtagaagctgagtctggactagcgcccaggctagct 41358792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 14461101 - 14461038
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||| ||||| ||||||||||||| | | |||||||||||||| |||||| |||||||||||    
T  14461101 gaaaagttaaaaattctagtaatggtagggcttgctacaaagaaaattggagctgagcctgggc 14461038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 28311313 - 28311250
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    ||||| |||||| ||||||||||||| | | ||| ||||||||||||||||| |||||||||||    
T  28311313 gaaaaactaaaaattctagtaatggtagggcttgttacaaagaaagttggagctgagcctgggc 28311250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 54846055 - 54846006
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||| | ||||||| ||||||||||| ||| |||||||    
T  54846055 ttgctacaaagaaagtagaagttgagtctgggctagtgtccaagctagct 54846006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 6941 - 6861
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||||||| | || ||||||||||||||| |||||||    
T  6941 gaaaagctaaaaattctagtaatggtagggcttgctacaaagaaagttggagctaagtctgggctagtgcccaggctagct 6861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 11547 - 11492
Alignment:
Q  34 aaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||| ||||||||||||| | | ||||||||||||||||||||| |||||||||||    
T  11547 aaaaattctagtaatggtagggcttgctacaaagaaagttggagctgagcctgggc 11492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 34188821 - 34188741
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||| | |||||||||||||||| || | ||||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  34188821 gaaaagttgaaagttctagtaatggctgggcttgctacaaagaaagttggagctgagcctcggctagtgcccaggctagct 34188741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 34249098 - 34249161
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  34249098 gaaaagctaaaaattctagtaatggttgggcttgctacaaagaaagttggagttgagtctgggc 34249161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 339371 - 339286
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| ||||||||||||||| ||||||||| |||||| ||||||||||||||| ||| |||  |||||||| |||||| |||||||    
T  339371 cacaggaaaagctaaaagttttagtaatggctgagtttgctacaaagaaagttagagctgaatctgggctaatgcccaggctagct 339286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 2960715 - 2960643
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttg-agttgctacaaagaaagttggagttgagcctgggctagtgccca 97  Q
    ||||||||||||||||||||| ||| || | |||||||||||||| |||||| ||||||||||||||| ||||    
T  2960715 gaaaagctaaaagttctagtattggctggacttgctacaaagaaaattggagctgagcctgggctagtaccca 2960643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 28614468 - 28614548
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||| |||||||||||||||||| |  | |||||||||||| | |||||| |||||||||||||||||||| |||||||    
T  28614468 gaaaagttaaaagttctagtaatggctaggcttgctacaaagataattggagctgagcctgggctagtgcccacgctagct 28614548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 10397877 - 10397940
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| |||| |||||||||| ||| ||||||||||||||||||| |||||||||||    
T  10397877 gaaaagctaaaaattctcgtaatggttgggtttgctacaaagaaagttggagctgagcctgggc 10397940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 5582475 - 5582426
Alignment:
Q  56 ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  5582475 ttgctacaaagaaagtagaagttgagcctgggctagtgcccaggctagct 5582426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 34763693 - 34763600
Alignment:
Q  170 aagccagttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgccatatataaacacattgagatagacgttc 263  Q
    |||||| | |||||||||||||||||||||||||||||||| || || |||||  |||||||||| |  |  ||||||||||| ||||| ||||    
T  34763693 aagccaatattgtggtgtgataacttgagtgctaaggcacttgcatcaaatcctattatgcatgctaggtccaaacacattgaaatagatgttc 34763600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 14938996 - 14939075
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgagtt-gctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| ||||||||||||||||||| |  ||| |||||||||||| |||||| |||||||| ||||||| ||| |||||||    
T  14938996 aaaaactaaaagttctagtaatggctaggtttgctacaaagaaaattggagctgagcctgagctagtgtccaggctagct 14939075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 2836298 - 2836348
Alignment:
Q  27 aaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggag 76  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||||||    
T  2836298 aaaagctaaaagttctaggaatggttgggtttgctacaaagaaagttggag 2836348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 1781102 - 1781158
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggag 76  Q
    |||| |||||||||||| || |||||||||||| | |||||||||||||||||||||    
T  1781102 cacaggaaaagctaaaatttatagtaatggttgggtttgctacaaagaaagttggag 1781158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 23663844 - 23663907
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggc 88  Q
    |||||||||||| || ||| |||||||| | |||||||||||||||||||||  ||||||||||    
T  23663844 gaaaagctaaaaattatagcaatggttgggcttgctacaaagaaagttggagccgagcctgggc 23663907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 9047012 - 9047073
Alignment:
Q  26 gaaaagctaaaagttctagtaatggtt-gagttgctacaaagaaagttggagttgagcctgg 86  Q
    |||||||||||| |||||||||||||| || || ||||||||||||||| || |||| ||||    
T  9047012 gaaaagctaaaaattctagtaatggttggacttactacaaagaaagttgaagctgagtctgg 9047073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 20602888 - 20602945
Alignment:
Q  177 ttttgtggtgtgataacttgagtgctaaggcactagcttccaatccggttatgcatgc 234  Q
    ||||||||||||||||| ||||||| ||||||||||| || || |  |||||||||||    
T  20602888 ttttgtggtgtgataacctgagtgccaaggcactagcatcgaacctagttatgcatgc 20602945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 15528965 - 15528897
Alignment:
Q  26 gaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtg 93  Q
    |||||||||||| ||||| ||||||| | | ||||||||||||||||||||| | ||||  ||||||||    
T  15528965 gaaaagctaaaaattctaataatggtagggcttgctacaaagaaagttggagattagcccaggctagtg 15528897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 109391 - 109476
Alignment:
Q  21 cacacgaaaagctaaaagttctagtaatggttgag-ttgctacaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    |||| |||||| ||||||||||||||||   || | ||||||||||||||||||||| ||||||||| |||||||||| |||||||    
T  109391 cacaggaaaagttaaaagttctagtaataactggggttgctacaaagaaagttggagctgagcctggactagtgcccaagctagct 109476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1235 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1235
Description:

Target: scaffold1235; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 2070 - 2110
Alignment:
Q  182 tggtgtgataacttgagtgctaaggcactagcttccaatcc 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  2070 tggtgtgataacttgagtgccaaggcactagcttctaatcc 2110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 21119 - 21163
Alignment:
Q  61 acaaagaaagttggagttgagcctgggctagtgcccatgctagct 105  Q
    ||||||||||||| || |||||||||||||||||||| |||||||    
T  21119 acaaagaaagttgaagctgagcctgggctagtgcccaggctagct 21163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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