View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_28 (Length: 355)
Name: NF14234_low_28
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 133 - 355
Target Start/End: Complemental strand, 27790784 - 27790562
Alignment:
| Q |
133 |
ttaatcaaccaaatagttatttaaccccaccactgatgaactgctactccttcatctcttaattttccatataaagccaaacattcccaatatgcccttt |
232 |
Q |
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| T |
27790784 |
ttaatcaaccaaatagttaattaaccccaccactgatgaactgctactccttcatctcttaattttccatataaagccaaacattcccaatatgcccttc |
27790685 |
T |
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| Q |
233 |
tacctctagtccctcgtttcaaattcaaaccttgtggcttgcactccaagaaaagctcatctaccaacataatagacttgctcctcatcatttcttcaac |
332 |
Q |
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| T |
27790684 |
tacctctagtccctcgtttcaaattcaaaccttgtggcttgcactccaagaaaagctcatccaccaacataatagacttgctcctcatcatttcttcaac |
27790585 |
T |
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| Q |
333 |
aacttcagcctcagctttcatca |
355 |
Q |
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||||||||||||||||||||||| |
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| T |
27790584 |
aacttcagcctcagctttcatca |
27790562 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 46244690 - 46244768
Alignment:
| Q |
153 |
ttaaccccaccactgatgaactgctactccttcatctcttaattttccatataaagccaaacattcccaatatgccctt |
231 |
Q |
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| T |
46244690 |
ttaaccccaccattggtgcactgcaacaccttcatcccttaatttgccatacaaagccaaacactcccaataagccctt |
46244768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 46244800 - 46244889
Alignment:
| Q |
266 |
gtggcttgcactccaagaaaagctcatctaccaacataatagacttgctcctcatcatttcttcaacaacttcagcctcagctttcatca |
355 |
Q |
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| T |
46244800 |
gtggcttgcattccaagaaaagttcatcaaccaaaccaatattgttacttctcatcatttcttcaacaacttcggcttcagctttcatca |
46244889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 8295273 - 8295304
Alignment:
| Q |
17 |
caagttgcacgcaaaagctcccacaaactcag |
48 |
Q |
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| T |
8295273 |
caagttgcacgcaaaagctcccacaaactcag |
8295304 |
T |
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