View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14234_low_35 (Length: 318)
Name: NF14234_low_35
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_35 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 42846329 - 42846045
Alignment:
| Q |
19 |
gttattttttgaattcgcagtgatagctttttgaataattttgaagatattgattgtaattttgaaaatgcagagtttggtttacttgtgatgagacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42846329 |
gttattttttgaattcgcagtgatagctttttgaataattttgaagatattgattgtaattttgaaaatgcagagtttggtttacttgtgatgagacatg |
42846230 |
T |
|
| Q |
119 |
agtttgaccaatatctaaagggaaatgatccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcggatgatttta |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42846229 |
agtttgaccaatatc---------------cagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcagatgatttta |
42846145 |
T |
|
| Q |
219 |
aggagaagatgaaaatgaagggaaagtgaaaagtatttagagacaacgaggatgacgagaatggtcgcatgcactccacacttttcattcccgatcccct |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42846144 |
aggagatgatgaaaatgaagggaaagtgaaaagtatttagagacaacgaggatgacgagaatggtcgcatgcactccacacttttcattcccgatcccct |
42846045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 42825581 - 42825334
Alignment:
| Q |
23 |
ttttttgaattcgcagtgatagctttttgaataattttgaagatattgattgtaattttgaaaatgcagagtttggtttacttgtgatgagacatgagtt |
122 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||| |||||| || | | ||||||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
42825581 |
ttttttgaattcacagtgatagcttttgggatacttttgatgaaacag----taattttgaaaatgcagagtttggttttcttgttatgaggcatgagtt |
42825486 |
T |
|
| Q |
123 |
tgaccaatatctaaagggaaatgatccagaatgtaacgaattgggagtggtccctcgcagagcctagcaaagaaaacatggatgcggatgattttaagga |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||| |||||||||||||| ||||| |||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
42825485 |
tgaccagtatccaaaggg-catgatccggaatgtggagaattgggagtggttcctcgaggagcctagcaaagaaagtgaggatgaggatgattttgagga |
42825387 |
T |
|
| Q |
223 |
gaagatgaaaatgaagggaaagtgaaaagtatttagagacaacgaggatgacg |
275 |
Q |
| |
|
||| | |||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
42825386 |
gaaaaggaaaataaagggaaagcggaaagtatttagagacaacgaggatgacg |
42825334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University