View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_39 (Length: 303)

Name: NF14234_low_39
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_39
NF14234_low_39
[»] chr7 (25 HSPs)
chr7 (25-176)||(5668450-5668604)
chr7 (195-293)||(5668147-5668245)
chr7 (24-94)||(38374563-38374633)
chr7 (21-97)||(2446347-2446423)
chr7 (20-96)||(19553491-19553567)
chr7 (23-90)||(18056743-18056810)
chr7 (24-97)||(22035440-22035513)
chr7 (20-64)||(22760901-22760945)
chr7 (21-97)||(43590946-43591022)
chr7 (20-96)||(48771976-48772052)
chr7 (22-97)||(7309396-7309470)
chr7 (21-60)||(20335829-20335868)
chr7 (34-97)||(41487411-41487474)
chr7 (27-97)||(21558173-21558243)
chr7 (24-97)||(3280447-3280519)
chr7 (20-97)||(25590649-25590726)
chr7 (20-97)||(30579373-30579450)
chr7 (20-93)||(48079681-48079754)
chr7 (177-205)||(5668376-5668404)
chr7 (20-60)||(26459408-26459448)
chr7 (24-96)||(35513508-35513580)
chr7 (21-89)||(37117123-37117191)
chr7 (21-93)||(42711997-42712069)
chr7 (24-96)||(45709670-45709742)
chr7 (24-80)||(49050469-49050525)
[»] chr3 (20 HSPs)
chr3 (20-97)||(4844472-4844549)
chr3 (20-97)||(4870168-4870245)
chr3 (20-97)||(10445100-10445177)
chr3 (20-96)||(11612337-11612413)
chr3 (20-97)||(51903839-51903916)
chr3 (21-63)||(33861729-33861771)
chr3 (23-97)||(47454578-47454652)
chr3 (24-97)||(5499368-5499441)
chr3 (24-93)||(36797729-36797798)
chr3 (20-97)||(44743816-44743893)
chr3 (21-97)||(14339649-14339725)
chr3 (23-94)||(19716238-19716309)
chr3 (21-96)||(31510680-31510755)
chr3 (23-97)||(44069799-44069873)
chr3 (23-97)||(54990743-54990817)
chr3 (20-97)||(12761550-12761627)
chr3 (20-93)||(31520570-31520643)
chr3 (20-97)||(52769944-52770021)
chr3 (20-60)||(30311344-30311384)
chr3 (22-94)||(47236935-47237007)
[»] chr5 (15 HSPs)
chr5 (20-97)||(30109270-30109346)
chr5 (20-97)||(16773845-16773922)
chr5 (20-97)||(84862-84939)
chr5 (20-97)||(29075819-29075896)
chr5 (21-97)||(6844768-6844844)
chr5 (23-93)||(3315256-3315326)
chr5 (20-97)||(14495766-14495843)
chr5 (20-97)||(22020823-22020900)
chr5 (23-96)||(29173531-29173604)
chr5 (21-97)||(8278236-8278312)
chr5 (21-97)||(12877732-12877808)
chr5 (20-60)||(14285199-14285239)
chr5 (20-60)||(34984844-34984884)
chr5 (24-96)||(35360048-35360120)
chr5 (20-60)||(43442234-43442274)
[»] chr4 (15 HSPs)
chr4 (20-97)||(37274420-37274497)
chr4 (20-97)||(28635734-28635811)
chr4 (20-93)||(39509108-39509181)
chr4 (23-96)||(46295138-46295211)
chr4 (21-93)||(19238542-19238614)
chr4 (23-97)||(7949415-7949489)
chr4 (23-97)||(30938180-30938254)
chr4 (23-97)||(32992653-32992727)
chr4 (20-93)||(55427165-55427238)
chr4 (20-97)||(37720175-37720252)
chr4 (24-97)||(49262645-49262718)
chr4 (20-60)||(23377994-23378034)
chr4 (20-60)||(37109349-37109389)
chr4 (26-90)||(44865378-44865442)
chr4 (21-97)||(51954153-51954229)
[»] chr8 (15 HSPs)
chr8 (20-96)||(968400-968476)
chr8 (22-93)||(29858014-29858085)
chr8 (20-93)||(2203530-2203603)
chr8 (20-97)||(16852378-16852455)
chr8 (20-97)||(28783098-28783175)
chr8 (20-97)||(36205233-36205308)
chr8 (21-94)||(35641865-35641938)
chr8 (21-97)||(29431050-29431126)
chr8 (23-97)||(6536561-6536635)
chr8 (23-97)||(11793482-11793556)
chr8 (20-93)||(3624618-3624690)
chr8 (24-97)||(8485041-8485114)
chr8 (20-93)||(22193329-22193402)
chr8 (20-60)||(11492071-11492111)
chr8 (29-97)||(18546323-18546391)
[»] scaffold0258 (1 HSPs)
scaffold0258 (20-97)||(15284-15361)
[»] chr2 (18 HSPs)
chr2 (20-93)||(39715030-39715103)
chr2 (21-96)||(19016070-19016145)
chr2 (25-96)||(33569820-33569891)
chr2 (20-97)||(21213807-21213884)
chr2 (24-97)||(37480117-37480190)
chr2 (20-96)||(12086091-12086167)
chr2 (20-97)||(25637189-25637266)
chr2 (20-97)||(29503309-29503385)
chr2 (20-97)||(42602592-42602669)
chr2 (21-97)||(7798997-7799072)
chr2 (20-96)||(27244346-27244422)
chr2 (20-96)||(42327357-42327433)
chr2 (23-97)||(41908599-41908673)
chr2 (19-96)||(33962746-33962823)
chr2 (20-97)||(42860386-42860463)
chr2 (21-97)||(1729855-1729930)
chr2 (21-89)||(29197345-29197413)
chr2 (23-95)||(37971936-37972008)
[»] chr1 (20 HSPs)
chr1 (24-97)||(12587312-12587384)
chr1 (20-96)||(42983336-42983412)
chr1 (24-97)||(25297814-25297887)
chr1 (24-93)||(51814536-51814605)
chr1 (21-97)||(16893433-16893509)
chr1 (21-97)||(24047063-24047139)
chr1 (27-62)||(35562770-35562805)
chr1 (23-97)||(19940833-19940907)
chr1 (23-93)||(43446004-43446074)
chr1 (24-97)||(1094567-1094640)
chr1 (24-65)||(19528320-19528361)
chr1 (23-96)||(39966134-39966207)
chr1 (23-96)||(42949254-42949327)
chr1 (20-60)||(2799900-2799940)
chr1 (20-60)||(15786318-15786358)
chr1 (21-97)||(18037574-18037650)
chr1 (25-97)||(24019066-24019138)
chr1 (25-97)||(31605809-31605881)
chr1 (20-60)||(33700771-33700811)
chr1 (20-60)||(36371508-36371548)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-96)||(112320-112396)
[»] chr6 (10 HSPs)
chr6 (20-97)||(24641151-24641228)
chr6 (20-96)||(6385900-6385976)
chr6 (20-96)||(33549142-33549218)
chr6 (24-96)||(34444845-34444917)
chr6 (21-97)||(6758383-6758459)
chr6 (20-94)||(30127438-30127512)
chr6 (20-97)||(31622952-31623029)
chr6 (21-97)||(12633048-12633124)
chr6 (20-96)||(16405123-16405198)
chr6 (21-97)||(21418509-21418585)
[»] scaffold0299 (1 HSPs)
scaffold0299 (20-60)||(11566-11606)
[»] scaffold0291 (1 HSPs)
scaffold0291 (20-63)||(2465-2508)
[»] scaffold0368 (1 HSPs)
scaffold0368 (23-96)||(14927-15000)
[»] scaffold0194 (1 HSPs)
scaffold0194 (20-60)||(13044-13084)
[»] scaffold0044 (1 HSPs)
scaffold0044 (20-96)||(92985-93061)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 5668604 - 5668450
Alignment:
Q  25 agtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttcnnnnnnnnnta---tctttaatatggt 121  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||          |   |||||||||||||    
T  5668604 agtgtgctcctcctcgaggtctcaggatcgattctctccggagttaatttatgtgggctaatttagcttcttcaaaaaaaaaaaaaatctttaatatggt 5668505  T
Q  122 tgaactcgatttatcttaagcagttcaaatactgagttcgcatttgcataccatt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5668504 tgaactcgatttatcttaagcagttcaaatactgagttcgcatttgcataccatt 5668450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 5668245 - 5668147
Alignment:
Q  195 caattatttggatactaaattagtttgacaaagattgtgtactcaattttgtttgcccaagtatgatcatattgttcaactgtgattttgtaacttcat 293  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5668245 caattatttggatacaaaattagtttgacaaagattgtgtactcaattttgtttgcccaagtatgatcatattgttcaactgtgattctgtaacttcat 5668147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 38374633 - 38374563
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttc 94  Q
    |||||||||||||||| |||||| ||| |||||||||||||| || |||||| |||| ||| |||||||||    
T  38374633 gagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagtttagcttc 38374563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 2446347 - 2446423
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||| ||| | | ||||||||| |||| ||  ||||| |||| ||||||||||||||||    
T  2446347 tgggagtgtgctcctcctcgagatctcaagttcgattctctccggtgccgatttaggtgggctaatttagcttcttc 2446423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 19553491 - 19553567
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||| |||||| ||| || |||||||||||  | |||||| |||| ||| |||||||||||    
T  19553491 ctgggagtgtgctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactttagcttctt 19553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 18056810 - 18056743
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttag 90  Q
    ||||||||||||||||  |||||| ||| |||||||||||||| ||||||||  |||| |||||||||    
T  18056810 ggagtgtgctcctcctgaaggtctcaggttcgattctccccggtgctaatttgggtgggctaatttag 18056743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 22035440 - 22035513
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||| |  ||| ||||||||| || | |  |||||| |||||||||||||||||||||    
T  22035440 gagtgtgctcctcctcgaggacccaggttcgattctctcctgtgtcaatttaagtggactaatttagcttcttc 22035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 22760901 - 22760945
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccg 64  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  22760901 ctgggagtgtgctcctcctcaaggtctcaggttcgattctccccg 22760945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 43590946 - 43591022
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| | |||| ||| |||||||||||  | || |||| | |||| ||||||||||||||||    
T  43590946 tgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttcttc 43591022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 48771976 - 48772052
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||||||||| ||||||| ||| |||||| ||||  |  | |||||| |||| |||||||||||||||    
T  48771976 ctgggagtgtgctcctccttgaggtctcaggttcgattatcccaagtaccaatttaggtgggctaatttagcttctt 48772052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 7309396 - 7309470
Alignment:
Q  22 gggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||| | | ||||||||| || | |  |||||| |||| ||||||||||||||||    
T  7309396 gggagtgtgctcctcctcgaggtctcaagttcgattctctcc-gtgtcaatttaagtgggctaatttagcttcttc 7309470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 20335868 - 20335829
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  20335868 tgggagtgtgctcctcctcgaggtctcaggttcgattctc 20335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 41487411 - 41487474
Alignment:
Q  34 ctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||| |||||| ||| |||||||| ||||| || |||||| |||| ||||||||||||||||    
T  41487411 ctcctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatttagcttcttc 41487474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 21558173 - 21558243
Alignment:
Q  27 tgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||| |||||| ||| ||||||||| | || || |||||| ||||  |||||||||||||||    
T  21558173 tgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttcttc 21558243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 3280519 - 3280447
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||| |||||| |   |||||| ||||||| || ||||||  ||||||||||||||||||||    
T  3280519 gagtgtgctcctcctcaaggtctcaat-tcgattatccccggtgccaatttagatggactaatttagcttcttc 3280447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 25590649 - 25590726
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||||||||  || |||||| ||  ||| |  |||||  |||| ||||||||||||||||    
T  25590649 ctgggagtgtgctcctcctcgaggtctcgggttcgattttcttcggtgtcaatttgagtgggctaatttagcttcttc 25590726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 30579373 - 30579450
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||| | ||||||| |||||| ||| |||||| || | || || |||||| |||| ||||||||||||||||    
T  30579373 ctgggagtgtccacctcctcaaggtctcaggttcgattttctctggtgccaatttaggtgggctaatttagcttcttc 30579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 48079681 - 48079754
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||| ||||| |||| |||||||||| ||| | ||||||| |||| ||||||||  |||| ||||||||||||    
T  48079681 ctgggtgtgtggtcctgctcgaggtctcaggtttgattctctccggtgctaatttgagtgggctaatttagctt 48079754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 5668404 - 5668376
Alignment:
Q  177 acaaaaaataaaatagaacaattatttgg 205  Q
    |||||||||||||||||||||||||||||    
T  5668404 acaaaaaataaaatagaacaattatttgg 5668376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 26459448 - 26459408
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  26459448 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 35513508 - 35513580
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||||||||  ||| | | |||||| || |||  | ||||||| ||||||||||||||||||||    
T  35513508 gagtgtgctcctcctcgatatctcatgttcgattttctccgatggtaatttaggtggactaatttagcttctt 35513580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 37117191 - 37117123
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaattta 89  Q
    ||||||||| |||||||| ||||| |  || ||||||||| |||| || |||||| |||||||||||||    
T  37117191 tgggagtgtactcctccttgaggtttcgggttcgattctctccggtgccaatttaggtggactaattta 37117123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 42711997 - 42712069
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||||| |||||| | | |||||||||||  | |  |||||| |||| ||||||||||||    
T  42711997 tgggagtgtgctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaatttagctt 42712069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 45709742 - 45709670
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||||||||||||| ||| |||||| || |||   | |||||| |||| |||| ||||||||||    
T  45709742 gagtgtgctcctcctcgaggtctcaggttcgattatctccgataccaatttaggtgggctaacttagcttctt 45709670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 49050525 - 49050469
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtgg 80  Q
    |||||| |||||||| ||||||| ||| |||||||||||||| || |||||| ||||    
T  49050525 gagtgtactcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgg 49050469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 4844549 - 4844472
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| || ||||| ||||| ||||||||||||||||    
T  4844549 ctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttcttc 4844472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 4870245 - 4870168
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| || ||||| ||||| ||||||||||||||||    
T  4870245 ctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttcttc 4870168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 10445177 - 10445100
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||| ||||||||| | || ||||||||  |||| ||||||||||||||||    
T  10445177 ctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttcttc 10445100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 11612337 - 11612413
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||  |||||| ||| ||||| |||||||| || |||||| || |||||||||||||||||    
T  11612337 ctgggagtgtgctcctccttaaggtctcaggttcgatgctccccggtgccaatttaggtcgactaatttagcttctt 11612413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 51903916 - 51903839
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||| ||||| ||| ||||||||| |||| |  |||||  |||| ||||||||||||||||    
T  51903916 ctgggagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttcttc 51903839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 33861771 - 33861729
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctcccc 63  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  33861771 tgggagtgtgctcctcctcgaggtctaatgttcgattctcccc 33861729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 47454652 - 47454578
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||||| ||| ||||||||||||   || |||||| ||||  || ||||||||||||    
T  47454652 ggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 47454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 5499441 - 5499368
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||  |||||||||| || ||||||||||| || |||||   | ||||||||||||||||||    
T  5499441 gagtgtgctcctccttaaggtctaaggttctattctccccggtgccaatttcaatagactaatttagcttcttc 5499368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 36797729 - 36797798
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||| || || | ||  |||||||||||||   ||||||||||||||||||||||||||    
T  36797729 gagtgtgctcctccttgaagttttagattcgattctccccgatactaatttatgtggactaatttagctt 36797798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 44743893 - 44743816
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||| |||||| || || | || |||||  ||||  |||||||||||||||    
T  44743893 ctgggagtgtgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttcttc 44743816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 14339649 - 14339725
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| | |||| ||| |||||||||||  | || |||| | |||| ||||||||||||||||    
T  14339649 tgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttcttc 14339725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 19716238 - 19716309
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttc 94  Q
    ||||||||||||||||| ||||||  || |||||||||||||| |  |||||  |||| |||||||||||||    
T  19716238 ggagtgtgctcctcctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaatttagcttc 19716309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 31510755 - 31510680
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||| |||||||||    ||||||| | |||||||||||||| ||||||||| |||| ||||||||| |||||    
T  31510755 tgggagtatgctcctccatacggtctaaagttcgattctccccggtgctaatttaggtgggctaatttagattctt 31510680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 44069799 - 44069873
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||| |||||| ||| | ||||||  |||| || |||||| |||| ||| ||||||||||||    
T  44069799 ggagtgtgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttc 44069873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 54990743 - 54990817
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||| |||||||||||| |||||| ||| |||||||||| ||  |  |||||| |||| ||||||||||||||||    
T  54990743 ggagcgtgctcctcctcaaggtctcaggttcgattctcctcgatggcaatttaggtgggctaatttagcttcttc 54990817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 12761550 - 12761627
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||| ||||||| ||| ||| ||| |||||| ||||||| || |||||| |||| ||| ||| ||||||||    
T  12761550 ctgggagtgtgttcctccttgagctctcaggttcgattttccccggtgccaatttaggtgggctagttttgcttcttc 12761627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 31520643 - 31520570
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||||||||||||| ||| | ||||||| || | |  |||||  |||| ||||||||||||    
T  31520643 ctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtgggctaatttagctt 31520570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 52770021 - 52769944
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| ||||||| ||| |||||||||    | |  |||||| |||| ||||||||||||||||    
T  52770021 ctgggagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttcttc 52769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 30311344 - 30311384
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  30311344 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 30311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 47237007 - 47236935
Alignment:
Q  22 gggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttc 94  Q
    ||||||||||||||| || |||||| | | |||||||||||||| || |||||  |||| || ||||||||||    
T  47237007 gggagtgtgctcctcttcaaggtctcatgttcgattctccccggtgccaatttgggtgggcttatttagcttc 47236935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 30109346 - 30109270
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| ||||||||| |||| ||||||||||||||||    
T  30109346 ctgggagtgtgctcctccttgaggtctcaggttcgattc-ccccggtgctaatttaggtgggctaatttagcttcttc 30109270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 16773845 - 16773922
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||| ||||||||| | |  || |||||| |||| ||||||||||||||||    
T  16773845 ctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttcttc 16773922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 84862 - 84939
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||| |||||| | | |||||||||||||| || | | |  |||| ||||||||||||||||    
T  84862 ctgggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccattatgggtgggctaatttagcttcttc 84939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 29075819 - 29075896
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||| ||| | | ||||||||| | || || ||||||  ||| ||||||||||||||||    
T  29075819 ctgggagtgtgctcctcctcgagatctcatgttcgattctctctggtgccaatttagatgggctaatttagcttcttc 29075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 6844768 - 6844844
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||| ||||||||||||||||||| |||||| || |  | || |||||| ||||| || ||||||||||||    
T  6844768 tgggagtgtgttcctcctcgaggtctaaggttcgattatctctcgtgccaatttaggtggattagtttagcttcttc 6844844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 3315256 - 3315326
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    |||||| |||||||||| |||||| ||| ||||||||||| || || |||||| | ||| |||||||||||    
T  3315256 ggagtgcgctcctcctcaaggtctcaggttcgattctcccaggtgccaatttaggcggattaatttagctt 3315326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 14495843 - 14495766
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||  | ||||||| |||  || ||||||  ||| ||| ||||||||||||    
T  14495843 ctgggagtgtgctcctcctcgaggtctcagatttgattctctccgatgccaatttagatgggctagtttagcttcttc 14495766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 22020900 - 22020823
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| || |||| ||  ||||||||| || | | ||||||| |||| ||||||||| ||||||    
T  22020900 ctgggagtgtgctcctccttgaagtctcagattcgattctctccagtgttaatttaggtgggctaatttagtttcttc 22020823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 29173531 - 29173604
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||||| | ||| |||||| || | || |  |||||| |||| |||||||||||||||    
T  29173531 ggagtgtgctcctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagcttctt 29173604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 8278312 - 8278236
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||| ||| | | | |||| || |||| ||  ||||| |||| ||||||||||||||||    
T  8278312 tgggagtgtgctcctcctcgagatctcaagtttgattatctccggtgccgatttaggtgggctaatttagcttcttc 8278236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 12877732 - 12877808
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||| | |||||| | |||| ||| ||||||||| | ||  |||||||| |||| ||||||||||||||||    
T  12877732 tgggagtgtgtttctcctcaatgtctcaggttcgattctctctggtactaatttaggtgggctaatttagcttcttc 12877808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 14285199 - 14285239
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  14285199 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 14285239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 34984844 - 34984884
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  34984844 ctgggagtgtgctcctcctcaaggtcttaggttcgattctc 34984884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 35360120 - 35360048
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||| ||||||||||||| ||| ||||||||| |||| || |||||| |||  | | |||||||||||    
T  35360120 gagtgtgcttctcctcgaggtctcaggttcgattctcaccggtgccaatttaggtgagcgagtttagcttctt 35360048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 43442234 - 43442274
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  43442234 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 43442274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 37274497 - 37274420
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||| |||||| ||| ||||||||| | || ||||||||| |||| ||||||||||||||||    
T  37274497 ctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttcttc 37274420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 28635734 - 28635811
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| ||||||| ||| ||||||||| | || || |||||  |||| ||||||||||||||||    
T  28635734 ctgggagtgtgctcctcctggaggtcttaggttcgattctctctggtgccaatttgggtgggctaatttagcttcttc 28635811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 39509108 - 39509181
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| | |  |||||| ||||  |||||||||||    
T  39509108 ctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagtggcaatttaggtgggttaatttagctt 39509181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 46295138 - 46295211
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||||||| |||||| ||| |||||||||||||| || |||||  |||| ||| |||||||||||    
T  46295138 ggagtgtgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 19238614 - 19238542
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||||||||||||  || ||||||||||||||  | |||||  |||| ||||||||||||    
T  19238614 tgggagtgtgctcctcctcgaggtctcgggttcgattctccccggtaccaatttgggtgggctaatttagctt 19238542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 7949489 - 7949415
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||| |||||| ||| ||||||||| | || |  |||||| |||| ||||||||||||||||    
T  7949489 ggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttcttc 7949415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 30938254 - 30938180
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||||| ||| ||||||||||||   || |||||| ||||  || ||||||||||||    
T  30938254 ggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 30938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 32992653 - 32992727
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||| |||||| | | |||||||||||||| |  |||||  |||||||| ||||||||||||    
T  32992653 ggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttcttc 32992727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 55427238 - 55427165
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    |||||||| ||||||| |||||||||| ||| |||||||||| ||| || |||||  |||| ||||||||||||    
T  55427238 ctgggagtctgctcctgctcgaggtctcaggttcgattctccgcggtgccaatttgggtgggctaatttagctt 55427165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 37720252 - 37720175
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||| ||||||| |||||  ||| ||||||||||| ||    |||||| |||| ||||||||||||||||    
T  37720252 ctgggagtgtgcccctcctcaaggtcccaggttcgattctcccagggatcaatttaggtgggctaatttagcttcttc 37720175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 49262718 - 49262645
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||  | ||||||| ||| |||||||||||| | || |||||| |||| ||||||||| ||||||    
T  49262718 gagtgtgctccttgttgaggtctcaggttcgattctccccagtgccaatttaggtgggctaatttagtttcttc 49262645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 23377994 - 23378034
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  23377994 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 23378034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 37109389 - 37109349
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  37109389 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 37109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 44865378 - 44865442
Alignment:
Q  26 gtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttag 90  Q
    |||||||||||||| |||||| ||| |||||||||||| | || |||||  |||||||| |||||    
T  44865378 gtgtgctcctcctcaaggtcttaggttcgattctcccctgtgccaatttcggtggactagtttag 44865442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 51954153 - 51954229
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||| |||||||||||||||||| ||| | |||| || |||| |  |||||  |||| ||||||||||||||||    
T  51954153 tgggagtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagcttcttc 51954229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 968400 - 968476
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||  || |||||| |||| |||||||||||||||    
T  968400 ctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 29858085 - 29858014
Alignment:
Q  22 gggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||||||||||| ||| ||||||| || ||| || |||||| |||| ||||||||||||    
T  29858085 gggagtgtgctcctcctcgaggtctcaggttcgattcccctcggtgccaatttaggtgggctaatttagctt 29858014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 2203530 - 2203603
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    |||||||||||||||||||| |||||| ||| || ||||||||||| || |||||  |||| ||||||||||||    
T  2203530 ctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaatttagctt 2203603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 16852378 - 16852455
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||| ||||||||||   | || |||||| |||| ||| ||||||||||||    
T  16852378 ctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctattttagcttcttc 16852455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 28783098 - 28783175
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||| |||||| | | |||||||||| ||| || |||||  |||| ||||||||||||||||    
T  28783098 ctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaatttagcttcttc 28783175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 36205233 - 36205308
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||| |||||| | | |||||||||||||  |  ||||||  ||||||||||||||||||||    
T  36205233 ctgggagtgtgctcctcctcaaggtctcatgttcgattctccccg--gtcaatttagatggactaatttagcttcttc 36205308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 35641938 - 35641865
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttc 94  Q
    ||||||||||||||||||||| |||| ||| ||||||||| || || | ||||||  ||| |||||||||||||    
T  35641938 tgggagtgtgctcctcctcgatgtctcaggttcgattctctccagaaccaatttagatgggctaatttagcttc 35641865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 29431050 - 29431126
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||| |||| || ||| |||||||||   || ||||||||  |||| ||||||||||||||||    
T  29431050 tgggagtgtgctcctccttgaggcctcaggttcgattctctttggtgctaatttgagtgggctaatttagcttcttc 29431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 6536561 - 6536635
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||| |||||| ||| || |||||| | || || |||||| ||||  |||||||||||||||    
T  6536561 ggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttcttc 6536635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 11793556 - 11793482
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||| |||||| ||| | |||||| ||||| || |||||  |||| ||| ||||||||||||    
T  11793556 ggagtgtgctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgggctagtttagcttcttc 11793482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 3624618 - 3624690
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||| || |||||| ||| ||||||||| |||| |  |||||| |||| ||||||||||||    
T  3624618 ctgggagtgtgctcctcttcaaggtctcaggttcgattctctccgg-gtcaatttaggtgggctaatttagctt 3624690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 8485041 - 8485114
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||| | ||||||| |   ||||||||| |||| || |||||| |||| ||||||||||||||||    
T  8485041 gagtgtgctcctctttgaggtctcattttcgattctctccggtgccaatttaggtgggctaatttagcttcttc 8485114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 22193402 - 22193329
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    |||||||||||||||||||| |||||| ||| ||||||||| ||| ||  |||||| |||| ||| ||| ||||    
T  22193402 ctgggagtgtgctcctcctcaaggtcttaggttcgattctctccgaaggcaatttaagtgggctagttttgctt 22193329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 11492111 - 11492071
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||| |||||||||| ||| |||||||||    
T  11492111 ctgggagtgtgctccttctcgaggtcttaggttcgattctc 11492071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 18546391 - 18546323
Alignment:
Q  29 tgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||| ||| ||||||||| |||| |  |||||| |||   |||||||||||||||    
T  18546391 tgctcctcctcgaggtctcaggttcgattctcaccggcgtcaatttaggtgagataatttagcttcttc 18546323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 15361 - 15284
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||| ||||||||| | |  || |||||| |||| ||||||||||||||||    
T  15361 ctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttcttc 15284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 39715030 - 39715103
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |  | |||||| |||| ||||||||||||    
T  39715030 ctgggagtgtgctcctcctcgaggtctcaggttcgattctccccagcaccaatttaggtgggctaatttagctt 39715103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 19016070 - 19016145
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||||||||| | | | |||||||||||| || |||||| || | |||||||||||||||    
T  19016070 tgggagtgtgctcctcctcgaggtctcaagtttgattctccccggtgccaatttaagtaggctaatttagcttctt 19016145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 33569891 - 33569820
Alignment:
Q  25 agtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||| |||||||||||| ||| ||||||||| | || ||||||||| |||||||||||| |||||||    
T  33569891 agtgtgctcttcctcgaggtctcaggttcgattctctctggtgctaatttaagtggactaattttgcttctt 33569820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 21213807 - 21213884
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||| ||||||| ||||||| ||| |||||||||||||| || |||||| |||| ||| ||| ||||||||    
T  21213807 ctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggctagttttgcttcttc 21213884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 37480117 - 37480190
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||| |||||| ||| ||||||||||||||  | |||||  |||| ||||||||||||||||    
T  37480117 gagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttcttc 37480190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 12086167 - 12086091
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||| ||||||||||||||| ||||||  || ||||||| | |||| ||||||||| |||| |||||||||||||||    
T  12086167 ctggaagtgtgctcctcctcaaggtctcgggttcgattccctccggtgctaatttaggtgggctaatttagcttctt 12086091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 25637189 - 25637266
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||| |||||||||| ||| ||| ||||| |||  || |||||| |||| |||||||| |||||||    
T  25637189 ctgggagtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatttaggtgggctaatttaacttcttc 25637266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 29503309 - 29503385
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||| |||||| ||| |||||||| ||||| |  |||||| |||| | ||||||||||||||    
T  29503309 ctgggagtgtgctcctcctcaaggtctcaggttcgattct-cccggtgtcaatttaagtgggcaaatttagcttcttc 29503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 42602592 - 42602669
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||| ||| |||||| ||| | ||||||| |||| || |||||  |||| ||||||||||||||||    
T  42602592 ctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaatttagcttcttc 42602669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 7799072 - 7798997
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||| ||| ||  ||||||||| || | || |||||| |||| ||||||||||||||||    
T  7799072 tgggagtgtgctcctcctcgagatctcagattcgattctctccagtgccaatttaagtgg-ctaatttagcttcttc 7798997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 27244346 - 27244422
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||| |||||||||||||||| ||||| |||||||||  | | | ||||||| |||  |||||||||||||||    
T  27244346 ctgggagtatgctcctcctcgaggtttaaggttcgattctcttcagtgttaatttaagtgagctaatttagcttctt 27244422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 42327433 - 42327357
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||| |||||| ||| |||||||||  ||| || |||||  |||| |||||||||| ||||    
T  42327433 ctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaatttagcatctt 42327357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 41908673 - 41908599
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||| |||||| | | |||||| ||||||| || |||||  |||| ||| ||||||||||||    
T  41908673 ggagtgtgctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagtttagcttcttc 41908599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 33962823 - 33962746
Alignment:
Q  19 actgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||||||| |||  |  ||||||||||   | || |||||| ||||||||||||| ||||||    
T  33962823 actgggagtgtgctcctcctcgagatctcggattcgattctccttagtgccaatttaggtggactaatttatcttctt 33962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 42860386 - 42860463
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| | | ||||||| |  ||| |||| |||  |||| |||||||| |||||||    
T  42860386 ctgggagtgtgctcctcctcgaggtctcaagttcgattcccgtcggtgctagtttgagtgggctaatttaacttcttc 42860463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 1729855 - 1729930
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| |||||| ||  | ||||||| | || || ||||| | ||||||||||||||||||||    
T  1729855 tgggagtgtgctcctcctctaggtcttagatttgattctctctggtgccaattt-tttggactaatttagcttcttc 1729930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 29197413 - 29197345
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaattta 89  Q
    |||||||||||||||||| || |||| | | |||||||| ||||| || |||||| |||| ||||||||    
T  29197413 tgggagtgtgctcctccttgatgtctcatgttcgattcttcccggtgccaatttaggtgggctaattta 29197345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 37971936 - 37972008
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttct 95  Q
    |||||||||||||  || | |||| ||| ||||||||| |||| || |||||| |||| ||||||||||||||    
T  37971936 ggagtgtgctccttgtcaaagtctcaggttcgattctctccggtgccaatttaggtgggctaatttagcttct 37972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 12587312 - 12587384
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||| ||| ||||||||| |||| || |||||| |||| ||||||||||||||||    
T  12587312 gagtgtgctcctcctcgaggtctcaggttcgattctctccggtgc-aatttaggtgggctaatttagcttcttc 12587384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 42983412 - 42983336
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||| ||||||| ||||||  ||| ||||||||| | || || |||||| ||||||||||||||||||||    
T  42983412 ctgggagtgtggtcctccttgaggtccgaggttcgattctctcaggtgccaatttaagtggactaatttagcttctt 42983336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 25297814 - 25297887
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||| ||| | ||||||| |||| |  |||||| ||||  |||||||||||||||    
T  25297814 gagtgtgctcctcctcgaggtctgaggtttgattctcaccggcgtcaatttaggtgggataatttagcttcttc 25297887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 51814536 - 51814605
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    |||||||||||||||| |||||| ||| ||||||||| |||| || |||||  |||| ||||||||||||    
T  51814536 gagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaatttagctt 51814605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 16893433 - 16893509
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||| |||||||||||||||| ||| |||||| || |||| |  |||||  |||| ||||||||||||||||    
T  16893433 tgggagtgtactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaatttagcttcttc 16893509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 24047139 - 24047063
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||||||||||| | | | |||||||||||| | || |||||| || | |||||||| |||||||    
T  24047139 tgggagtgtgctcctcctcgaggtttcaagttcgattctccccagtgccaatttaggttggctaatttaacttcttc 24047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 35562770 - 35562805
Alignment:
Q  27 tgtgctcctcctcgaggtctaaggatcgattctccc 62  Q
    |||||||||||||||||||||||||| |||||||||    
T  35562770 tgtgctcctcctcgaggtctaaggattgattctccc 35562805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 19940907 - 19940833
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||  |||||| ||| | ||||||| |||| || ||||||||||| ||  ||||||||||||    
T  19940907 ggagtgtgctcctccttaaggtctcaggtttgattctctccggtgccaatttatgtgggctggtttagcttcttc 19940833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 43446004 - 43446074
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagctt 93  Q
    ||||||||||||||||| |||||| | | |||||||||||||| || |||||  |||| ||| ||||||||    
T  43446004 ggagtgtgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtttagctt 43446074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 1094567 - 1094640
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||| |||||||| |   ||||||||| |||| || |||||| |||| |||||||| |||||||    
T  1094567 gagtgtgctcctccacgaggtctcaaattcgattctctccggtgccaatttaggtgggctaatttaacttcttc 1094640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 19528361 - 19528320
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccgg 65  Q
    |||||||||||||||| |||||| ||| ||||||||||||||    
T  19528361 gagtgtgctcctcctcaaggtctcaggttcgattctccccgg 19528320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 39966134 - 39966207
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||| ||||||||| |||||| ||| ||| |||||||||| ||||||||  |||  ||| |||||||||||    
T  39966134 ggagtgtactcctcctcaaggtctcaggttcgtttctccccggtgctaatttgggtgtgctagtttagcttctt 39966207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 42949327 - 42949254
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||||||| |   | ||||||| |||| |  |||||| |||| |||||||||||||||    
T  42949327 ggagtgtgctcctcctcgaggtctcatatttgattctctccggtgacaatttaagtgggctaatttagcttctt 42949254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 2799900 - 2799940
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  2799900 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 2799940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 15786358 - 15786318
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  15786358 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 15786318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 18037650 - 18037574
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||  ||||| ||| | | ||||||||| |||| ||  ||||| |||| ||||||||||||||||    
T  18037650 tgggagtgtgctccttttcgagatctcaagttcgattctctccggtgccgatttaggtgggctaatttagcttcttc 18037574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 24019066 - 24019138
Alignment:
Q  25 agtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||| |||||| ||| |||||||||| |||  | |||||  |||| ||| ||||||||||||    
T  24019066 agtgtgctcctcctcaaggtcttaggttcgattctcctcggtaccaatttcggtgggctagtttagcttcttc 24019138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 31605881 - 31605809
Alignment:
Q  25 agtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||| |||||| | | |||||||||||||| || |||||  |||| ||| |||||| |||||    
T  31605881 agtgtgctcctcctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagtttagcctcttc 31605809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 33700811 - 33700771
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  33700811 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 33700771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 36371508 - 36371548
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  36371508 ctgggagtgtgctcctcctcaaggtctgaggttcgattctc 36371548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 112320 - 112396
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||| ||||| | ||||||| ||| ||||||||| |||| || |||||| ||||||||||||||||||||    
T  112320 ctgggagtgtggtcctctttgaggtctgaggttcgattctctccggtgccaatttaggtggactaatttagcttctt 112396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 24641228 - 24641151
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||| ||||| |||||||||| |   || |||||| |||| |||||||| |||||||    
T  24641228 ctgggagtgtgctcctcctcgaggtttaaggttcgattctcctcactgccaatttaggtgggctaatttaacttcttc 24641151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 6385900 - 6385976
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||| ||||||||||||  |||||| ||| ||||||||| |||| ||||||||  |||| |||||||||||||||    
T  6385900 ctgggactgtgctcctccttaaggtctcaggttcgattctctccggtgctaatttgggtgggctaatttagcttctt 6385976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 33549142 - 33549218
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||||||||||||||||| ||| ||||||||| | |  || |||||| |||  |||||||||||||||    
T  33549142 ctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgagctaatttagcttctt 33549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 34444845 - 34444917
Alignment:
Q  24 gagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||| | |||||| ||| ||||||||||| ||||||| |||  |||| |||||||||||||||    
T  34444845 gagtgtgctcctccccaaggtctcaggttcgattctccctggagctagtttgagtgggctaatttagcttctt 34444917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 6758459 - 6758383
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||| ||||||||||| | ||||||||||| | || |  |||||| |||| | ||||||||||||||    
T  6758459 tgggagtgtgctccacctcgaggtctcaagatcgattctctctggtgtcaatttaggtgggcaaatttagcttcttc 6758383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 30127438 - 30127512
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttc 94  Q
    ||||||||||||||||| ||||||||| ||| ||||||||  |||| || |||||| || |  ||||||||||||    
T  30127438 ctgggagtgtgctcctcttcgaggtctcaggttcgattctttccggtgccaatttaggtaggttaatttagcttc 30127512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 31623029 - 31622952
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||||||||||| ||| | || || | |||| |  |||||  |||| ||||||||||||||||    
T  31623029 ctgggagtgtgctcctcctcgaggtctcaggtttgaatcactccggtgtcaatttgggtgggctaatttagcttcttc 31622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 12633048 - 12633124
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    |||||||||||||||| ||||| ||| | | ||||||||| ||   |  |||||| |||||||||||||||||||||    
T  12633048 tgggagtgtgctcctcttcgagatctcatgttcgattctctccaatgtcaatttaagtggactaatttagcttcttc 12633124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 16405123 - 16405198
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||||| ||||||||||||| ||  ||||||||| || | |  |||||| || |||||||||||||||||    
T  16405123 ctgggagtgtgcttctcctcgaggtctcagtttcgattctcacctgtgtcaatttaggt-gactaatttagcttctt 16405198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 21418509 - 21418585
Alignment:
Q  21 tgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttcttc 97  Q
    ||||||||||||||||||| | |||| | | |||||||||||  | || |||| | |||| ||||||||||||||||    
T  21418509 tgggagtgtgctcctcctccatgtctcaagttcgattctccctagtgccaattaaggtgggctaatttagcttcttc 21418585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 11566 - 11606
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  11566 ctgggagtgtgctcctcctcgaggtctcaggttcgattctc 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 2508 - 2465
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctcccc 63  Q
    |||||||||||||||||||| |||||| ||| ||||||||||||    
T  2508 ctgggagtgtgctcctcctcaaggtctcaggttcgattctcccc 2465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 15000 - 14927
Alignment:
Q  23 ggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    |||||||||||||||||||||||| |   | ||||||| |||| |  |||||| |||| |||||||||||||||    
T  15000 ggagtgtgctcctcctcgaggtctcatatttgattctctccggtgacaatttaagtgggctaatttagcttctt 14927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 13084 - 13044
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctc 60  Q
    |||||||||||||||||||| |||||| ||| |||||||||    
T  13084 ctgggagtgtgctcctcctcaaggtctcaggttcgattctc 13044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 92985 - 93061
Alignment:
Q  20 ctgggagtgtgctcctcctcgaggtctaaggatcgattctccccggagctaatttatgtggactaatttagcttctt 96  Q
    ||||||||||| ||||||| ||||||| ||| ||||||||  | ||  | |||||| |||||||||||||| |||||    
T  92985 ctgggagtgtgatcctccttgaggtctgaggttcgattctttcaggtaccaatttaggtggactaatttagattctt 93061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University