View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_4 (Length: 613)

Name: NF14234_low_4
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_4
NF14234_low_4
[»] chr5 (5 HSPs)
chr5 (19-317)||(10330124-10330421)
chr5 (485-604)||(10330419-10330538)
chr5 (136-209)||(35518280-35518353)
chr5 (73-121)||(16552782-16552830)
chr5 (75-123)||(26525979-26526027)
[»] chr3 (4 HSPs)
chr3 (136-210)||(53653605-53653679)
chr3 (163-211)||(24781185-24781233)
chr3 (70-121)||(42133612-42133663)
chr3 (354-423)||(24781379-24781448)
[»] chr1 (1 HSPs)
chr1 (70-120)||(44632438-44632488)
[»] chr8 (2 HSPs)
chr8 (141-195)||(13465995-13466049)
chr8 (307-416)||(28827249-28827358)
[»] chr4 (1 HSPs)
chr4 (66-118)||(44598060-44598112)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 10330124 - 10330421
Alignment:
Q  19 acctcctttcctttttcaaaggtttttcaggtattattcttaaaattgagacttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaaga 118  Q
    |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10330124 acctcctttccttttttaaaggtttttcagatatcattcttaaaattgagacttgtaaaattcgttgggttcattgagacaaagtgtgtttacctaaaga 10330223  T
Q  119 gaaggaaggtgggggagtttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggtgtcaccttt 218  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10330224 gaaggaaggtgggg-agtttacaagttttttatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggtgtcaccttt 10330322  T
Q  219 cggctcataaacatgggcttctaattagggaagtggttagagagagcatcacaaattcgatttggtggaagaatatttttagcagtatgagaggtgatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||    
T  10330323 cggctcataaacatgggcttctaattagggaagtggttagagagagcatcacaaattcaatttggtggaagaatatttttagaattatgagaggtgatg 10330421  T

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Target: chr5; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 10330419 - 10330538
Alignment:
Q  485 atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtgta 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10330419 atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtcta 10330518  T
Q  585 acatttcattgcagaataat 604  Q
    | |||||||||||| |||||    
T  10330519 atatttcattgcaggataat 10330538  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 35518353 - 35518280
Alignment:
Q  136 tttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggt 209  Q
    |||| |||||||||||||   | ||||| ||||||||||||||| ||||||||||||||| ||||  |||||||    
T  35518353 tttaaaagtttttaatttacatattttagggaagtggtgttggatgttaaggagggagaatgatggattttggt 35518280  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 16552830 - 16552782
Alignment:
Q  73 gtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaa 121  Q
    |||||||||||||||||||||   ||||||||| ||||| |||||||||    
T  16552830 gtaaaattcattgggttcatttgaacaaagtgtctttacataaagagaa 16552782  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 26525979 - 26526027
Alignment:
Q  75 aaaattcattgggttcattgagacaaagtgtgtttacctaaagagaagg 123  Q
    |||||||||| ||| || ||| |||||||||||||||| ||||||||||    
T  26525979 aaaattcattaggtccactgaaacaaagtgtgtttaccaaaagagaagg 26526027  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 53653605 - 53653679
Alignment:
Q  136 tttacaagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaaagatgagttttggtg 210  Q
    |||| ||||||||||||| |||||||||   |||||||||||||| |||| ||||||||||  ||||||||||||    
T  53653605 tttaaaagtttttaatttagctcttttagataagtggtgttggagattaaagagggagaaatgtgagttttggtg 53653679  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 24781185 - 24781233
Alignment:
Q  163 aaggaagtggtgttggaggttaaggagggagaaagatgagttttggtgt 211  Q
    |||||||||||||  |||||||||||  |||||||||||||||||||||    
T  24781185 aaggaagtggtgtaagaggttaaggaatgagaaagatgagttttggtgt 24781233  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 42133612 - 42133663
Alignment:
Q  70 cttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagagaa 121  Q
    ||||||||| |||||  |||||||| |||||| |||||||||||||||||||    
T  42133612 cttgtaaaactcattaagttcattgggacaaaatgtgtttacctaaagagaa 42133663  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 24781379 - 24781448
Alignment:
Q  354 ttaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggctagatggggaggtggtaaa 423  Q
    |||| |||||||||||||||||| |  ||||||  |  || ||||||||||||| |||||||||||||||    
T  24781379 ttaagaaaatagaaaatggtagtgaagcgttgtcctggcatgagtcgtggctaggtggggaggtggtaaa 24781448  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 44632438 - 44632488
Alignment:
Q  70 cttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaagaga 120  Q
    ||||||||||| || ||||  ||||||||||||||||||||||||||||||    
T  44632438 cttgtaaaattgatcgggtctattgagacaaagtgtgtttacctaaagaga 44632488  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 13466049 - 13465995
Alignment:
Q  141 aagtttttaatttggctcttttaaggaagtggtgttggaggttaaggagggagaa 195  Q
    ||||||||||||| ||  ||||| ||||||||||||||||||||| ||| |||||    
T  13466049 aagtttttaatttagccattttagggaagtggtgttggaggttaaagagtgagaa 13465995  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 416
Target Start/End: Complemental strand, 28827358 - 28827249
Alignment:
Q  307 gagaggtgatgagataagtggagggagatgatttgtgtataatgttattaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggcta 406  Q
    ||||||||| ||| | | |||||||||||| ||| || ||||||||| ||| ||||||| |||| ||| ||| || |||||||  |||| ||||| | ||    
T  28827358 gagaggtgacgaggtgaatggagggagatggtttttggataatgttactaagaaaataggaaattgtactaatactttgttttggcacgtgtcgttgtta 28827259  T
Q  407 gatggggagg 416  Q
    |||| |||||    
T  28827258 gatgaggagg 28827249  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 44598112 - 44598060
Alignment:
Q  66 gagacttgtaaaattcattgggttcattgagacaaagtgtgtttacctaaaga 118  Q
    |||||| |||||||| ||||||||||||  |||||||||||||| | ||||||    
T  44598112 gagactcgtaaaatttattgggttcattaggacaaagtgtgtttgcataaaga 44598060  T

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