View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_49 (Length: 273)
Name: NF14234_low_49
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33063357 - 33063612
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33063357 |
ttcctagatcagtaggcttattaccggaagttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33063456 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063457 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
33063556 |
T |
|
| Q |
201 |
attgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
256 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063557 |
atcgcatctccattcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
33063612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33065538 - 33065793
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33065538 |
ttcctagatcagtaggcttattaccggaagttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33065637 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33065638 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
33065737 |
T |
|
| Q |
201 |
attgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
256 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33065738 |
atcgcatctccattcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
33065793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33064452 - 33064706
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33064452 |
ttcctagatcagtaggcttattaccgga-gttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33064550 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064551 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
33064650 |
T |
|
| Q |
201 |
attgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
256 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064651 |
atcgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
33064706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33066612 - 33066866
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
33066612 |
ttcctagatcagtaggcttattaccgga-gttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33066710 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066711 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
33066810 |
T |
|
| Q |
201 |
attgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
256 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066811 |
atcgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
33066866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33067698 - 33067952
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33067698 |
ttcctagatcagtaggcttattaccgga-gttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33067796 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067797 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
33067896 |
T |
|
| Q |
201 |
attgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
256 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067897 |
atcgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
33067952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33068750 - 33069004
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33068750 |
ttcctagatcagtaggcttattaccgga-gttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33068848 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccagctcaactgggttgttatgcacaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33068849 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaaaccaactcaactgggttgttatgcacaaac |
33068948 |
T |
|
| Q |
201 |
attgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
256 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33068949 |
atcgcatctcctttcaaatcaacctttctctcgccaaactccaattgaggaaaatc |
33069004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 33069836 - 33070005
Alignment:
| Q |
1 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagatgaacttctattttcattcatgagccataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33069836 |
ttcctagatcagtaggcttattactggaagttggaacaacaatttcaatcacaaattcagataagaaagataaacttctattttcattcatgagccataa |
33069935 |
T |
|
| Q |
101 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatgtctaccatgacaa |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
33069936 |
cttgtaaggagtattgtaaagtatacctccatagctggctttcaccttggcatcatatctaccataacaa |
33070005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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