View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_51 (Length: 271)

Name: NF14234_low_51
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_51
NF14234_low_51
[»] chr1 (14 HSPs)
chr1 (1-266)||(18409897-18410157)
chr1 (1-266)||(18429022-18429282)
chr1 (105-167)||(18437812-18437874)
chr1 (105-167)||(18448670-18448732)
chr1 (105-167)||(18453763-18453825)
chr1 (105-158)||(18423547-18423600)
chr1 (90-145)||(18427174-18427229)
chr1 (189-218)||(18437882-18437911)
chr1 (189-218)||(18448740-18448769)
chr1 (189-218)||(18453833-18453862)
chr1 (85-144)||(18408135-18408195)
chr1 (6-62)||(18437711-18437767)
chr1 (6-62)||(18448569-18448625)
chr1 (6-62)||(18453662-18453718)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 18409897 - 18410157
Alignment:
Q  1 gcaacgactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccccaaatgtgttttaaggtatgtacacaatcctgttttat 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  18409897 gcaacgactaataatatactacaaaaatacatgggacaactcaactataaaacaggagtccccaaatgtgttttaaggtatgtacacaatcctgttttat 18409996  T
Q  101 aggcacatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataataataagagcaaggaatgcacacatgcctcttc 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||    
T  18409997 aggtacatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataataata-----atggaatgcacacatgcctcttc 18410091  T
Q  201 cttcctctttaatcactcggccattggataacaaaacataactgttgccgccaaccctatgctact 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18410092 cttcctctttaatcactcggccattggataacaaaacataactgttgccgccaaccatatgatact 18410157  T

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Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 18429022 - 18429282
Alignment:
Q  1 gcaacgactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccccaaatgtgttttaaggtatgtacacaatcctgttttat 100  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  18429022 gcaacgactagtgatatattacaaaaatacatggcacaactcaactataaaacaggagtccccaaatgtggtttaaggtatgtacacaatcctgttttat 18429121  T
Q  101 aggcacatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataataataagagcaaggaatgcacacatgcctcttc 200  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||    
T  18429122 aggtacatgtttgtctatattgtttacacactttcgatgtgggacaacttctgaactatcacaataataata-----atggaatgcacacatgcctcttc 18429216  T
Q  201 cttcctctttaatcactcggccattggataacaaaacataactgttgccgccaaccctatgctact 266  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18429217 cttcctctttaatcacttggccattggataacaaaacataactgttgccgccaaccatatgatact 18429282  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 18437812 - 18437874
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  18437812 acatgtttgtctacgttgtttacacactttcgatgtgggacaacttctgaactaccataataa 18437874  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 18448670 - 18448732
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  18448670 acatgtttgtctacgttgtttacacactttcgatgtgggacaacttctgaactaccataataa 18448732  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 18453763 - 18453825
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  18453763 acatgtttgtctacgttgtttacacactttcgatgtgggacaacttctgaactaccataataa 18453825  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 18423547 - 18423600
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaacta 158  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  18423547 acatgtttgtctacgttgtttacacactttcaatgtgggacaacttctgaacta 18423600  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 18427174 - 18427229
Alignment:
Q  90 tcctgttttataggcacatgtttgtctatgttgtttacacactttcgatgtgggac 145  Q
    |||| ||||||||| |||||| |||  ||||||| |||||||||||||||||||||    
T  18427174 tcctattttataggtacatgtatgttcatgttgtctacacactttcgatgtgggac 18427229  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 18437882 - 18437911
Alignment:
Q  189 acatgcctcttccttcctctttaatcactc 218  Q
    ||||||||||||||||||||||||||||||    
T  18437882 acatgcctcttccttcctctttaatcactc 18437911  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 18448740 - 18448769
Alignment:
Q  189 acatgcctcttccttcctctttaatcactc 218  Q
    ||||||||||||||||||||||||||||||    
T  18448740 acatgcctcttccttcctctttaatcactc 18448769  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 18453833 - 18453862
Alignment:
Q  189 acatgcctcttccttcctctttaatcactc 218  Q
    ||||||||||||||||||||||||||||||    
T  18453833 acatgcctcttccttcctctttaatcactc 18453862  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 18408135 - 18408195
Alignment:
Q  85 cacaatcctgttttata-ggcacatgtttgtctatgttgtttacacactttcgatgtggga 144  Q
    |||||| || ||||||| || |||||| ||||||| |||| ||||||||||||||||||||    
T  18408135 cacaatactcttttataaggtacatgtatgtctatattgtctacacactttcgatgtggga 18408195  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18437711 - 18437767
Alignment:
Q  6 gactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccc 62  Q
    ||||| |||||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  18437711 gactagtgatataccaccagaattcatgggacaacttaactataaaacatgggtccc 18437767  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18448569 - 18448625
Alignment:
Q  6 gactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccc 62  Q
    ||||| |||||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  18448569 gactagtgatataccaccagaattcatgggacaacttaactataaaacatgggtccc 18448625  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18453662 - 18453718
Alignment:
Q  6 gactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccc 62  Q
    ||||| |||||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  18453662 gactagtgatataccaccagaattcatgggacaacttaactataaaacatgggtccc 18453718  T

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