View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_52 (Length: 267)

Name: NF14234_low_52
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_52
NF14234_low_52
[»] chr3 (1 HSPs)
chr3 (19-267)||(50273211-50273459)
[»] chr1 (2 HSPs)
chr1 (23-263)||(1499274-1499514)
chr1 (23-263)||(1459229-1459469)
[»] chr8 (2 HSPs)
chr8 (23-243)||(26787119-26787339)
chr8 (53-126)||(975615-975688)
[»] chr6 (1 HSPs)
chr6 (47-142)||(3151585-3151680)
[»] chr4 (2 HSPs)
chr4 (47-255)||(48439770-48439978)
chr4 (59-138)||(44529636-44529715)
[»] chr2 (4 HSPs)
chr2 (47-142)||(45200171-45200266)
chr2 (158-263)||(15865984-15866089)
chr2 (58-114)||(15866291-15866347)
chr2 (47-114)||(21983202-21983269)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 50273459 - 50273211
Alignment:
Q  19 atcctgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273459 atcctgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcct 50273360  T
Q  119 aagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273359 aagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttg 50273260  T
Q  219 aacatttcagctgctcgaacacttcctctactggaattcgttcctgaaa 267  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50273259 aacatttcagttgctcgaacacttcctctactggaattcgttcctgaaa 50273211  T

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Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 1499274 - 1499514
Alignment:
Q  23 tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga 122  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || |    
T  1499274 tgccaatcagggggccttccacttccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaaggattccacataaaacccaaaa 1499373  T
Q  123 acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca 222  Q
    |||||||||||||||| ||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || | ||||  |||||||||    
T  1499374 acttcaaaaacttgctctcttttttctcttccaatttgtttggtccaaagacttgaagcctgttggctccttcttctgatgtcagaccttgtcttgaaca 1499473  T
Q  223 tttcagctgctcgaacacttcctctactggaattcgttcct 263  Q
    ||| |||||||| ||||| || |||| |||||| |||||||    
T  1499474 ttttagctgctcaaacacctcgtctattggaatccgttcct 1499514  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 1459469 - 1459229
Alignment:
Q  23 tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga 122  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| |    
T  1459469 tgccaatcaggaggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaagggttccacataaaacctaaaa 1459370  T
Q  123 acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca 222  Q
    |||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||| |||||||||| ||||| || | ||||  |||||||||    
T  1459369 acttcaaaaacttgttctcacttttctcttccagtttgtttggtccaaagacttgaagcctgctggctccttcctctgatgtcagaccttgtcttgaaca 1459270  T
Q  223 tttcagctgctcgaacacttcctctactggaattcgttcct 263  Q
    ||| || || || |||||||| |||| |||||  |||||||    
T  1459269 ttttagatgatcaaacacttcttctattggaacccgttcct 1459229  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 26787339 - 26787119
Alignment:
Q  23 tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga 122  Q
    ||||||||||| || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || |    
T  26787339 tgccaatcagggggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccacataaaacccaaaa 26787240  T
Q  123 acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca 222  Q
    | |||||||||||| | ||  |||||||||| | ||||||  | ||||| |||| ||||||  | |||||||| || || || ||||||  ||| |||||    
T  26787239 atttcaaaaacttgttctcagttttctcttcgagtttgttatgtccaaatacttcaagcctactcgctccttcctccgatgtcaaaccttgtctcgaaca 26787140  T
Q  223 tttcagctgctcgaacacttc 243  Q
    |||||| || |||||||||||    
T  26787139 tttcagatgatcgaacacttc 26787119  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 975615 - 975688
Alignment:
Q  53 gccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaactt 126  Q
    |||| |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||    
T  975615 gccatagcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaaccctaaaaactt 975688  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 3151680 - 3151585
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc 142  Q
    ||||| ||||||||||| ||||| || || ||||||||||| |||||||| |  ||||||||||||||||| || |||||||||||||||||||||    
T  3151680 ccattggccaaagcaatagccatgattgctgcagcttccatcacccatgaaagaggattccacataaatcccaaaaacttcaaaaacttgctttcc 3151585  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 255
Target Start/End: Original strand, 48439770 - 48439978
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttt 146  Q
    ||||| |||||  ||||||||||||  |||||| | |||||||||||||||| |||||||||||| || || ||||| || |  |||||||||||  |||    
T  48439770 ccatttgccaatccaatggccataagggcagcaacctccataacccatgatagtggattccacatgaaacccaagaatttaagtaacttgctttcagttt 48439869  T
Q  147 tctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctc 246  Q
    |||| || || ||||| |||||||| | ||| ||||| ||  |||| ||  |||| ||||||||  |||| | |||||| || |||| ||| ||||||||    
T  48439870 tctcctctaacttgttaggaccaaatatttgtagcctattctctccctcagctgatgttaaaccctctctagtacattttagttgcttgaagacttcctc 48439969  T
Q  247 tactggaat 255  Q
     | ||||||    
T  48439970 aattggaat 48439978  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 44529715 - 44529636
Alignment:
Q  59 gcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgct 138  Q
    ||||| ||||| |||||||| || ||||||||||| || |  ||||||||||||||||| |  || ||||||||||||||    
T  44529715 gcaatagccattatagcagctgcctccataacccaagaaagaggattccacataaatcccagaaatttcaaaaacttgct 44529636  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 45200171 - 45200266
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc 142  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||||| || ||||| ||||  || |||||||||    
T  45200171 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctttcc 45200266  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 263
Target Start/End: Complemental strand, 15866089 - 15865984
Alignment:
Q  158 ttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaacatttcagctgctcgaacacttcctctactggaattc 257  Q
    |||||||||||||| | ||||| ||||||  |||||||    ||||  |||||| |||| | |||||||| |||||||||||||||||| | ||||||||    
T  15866089 ttgtttggaccaaatatttgaatcctgttttctccttctgtggaggacaaaccttctctggtacatttcaactgctcgaacacttcctcgattggaattc 15865990  T
Q  258 gttcct 263  Q
    ||||||    
T  15865989 gttcct 15865984  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 15866347 - 15866291
Alignment:
Q  58 agcaatggccataatagcagcagcttccataacccatgataatggattccacataaa 114  Q
    |||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||||||    
T  15866347 agcaattgccattaaagctgcagcttccatcacccatgataatggattccacataaa 15866291  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 21983202 - 21983269
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaa 114  Q
    ||||| |||||  |||||||||| || ||||| || ||||| ||||||||||||||||||||||||||    
T  21983202 ccattggccaatacaatggccatgattgcagctgcctccatgacccatgataatggattccacataaa 21983269  T

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