View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_55 (Length: 261)

Name: NF14234_low_55
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_55
NF14234_low_55
[»] chr1 (2 HSPs)
chr1 (100-238)||(10418303-10418441)
chr1 (136-187)||(10414631-10414682)
[»] chr5 (2 HSPs)
chr5 (122-207)||(35369726-35369815)
chr5 (36-71)||(35369831-35369866)
[»] chr2 (4 HSPs)
chr2 (125-185)||(30665904-30665964)
chr2 (118-185)||(30620079-30620146)
chr2 (118-185)||(30622700-30622767)
chr2 (118-185)||(30625321-30625388)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 10418303 - 10418441
Alignment:
Q  100 agataagagggtttccacacaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaaggagaaaaatgaaatat 199  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10418303 agataagagggtttccacgcaagtcaagctatcatcgatcattccaggaaggctgagagcaaaacgacactgtggaaagtaaaggagaaaaatgaaatat 10418402  T
Q  200 agctacttttccacataccgcggaccaaaatgtatattt 238  Q
    ||||||||||||||  ||| || ||||||| ||||||||    
T  10418403 agctacttttccacggaccacgaaccaaaaagtatattt 10418441  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 10414631 - 10414682
Alignment:
Q  136 gatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaaggaga 187  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||| ||||    
T  10414631 gatcattccaggaaggaagagagcaaaacgacagtgtgcaaaataaatgaga 10414682  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 35369815 - 35369726
Alignment:
Q  122 gtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagta----aaggagaaaaatgaaatatagctactt 207  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    ||||||| |||||||||||||||||||    
T  35369815 gtcaagctatcatcgatcattccagtaaggcagagagcaaaacgacagtgtggaaattaaattaaggagagaaatgaaatatagctactt 35369726  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 35369866 - 35369831
Alignment:
Q  36 ttacatgcttaatacgatatttatttaaagagtgaa 71  Q
    |||| |||||||||||||||||||||||||||||||    
T  35369866 ttacttgcttaatacgatatttatttaaagagtgaa 35369831  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 30665964 - 30665904
Alignment:
Q  125 aagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga 185  Q
    |||||||||  |||||||| |||||||||||||| |||||||||||| ||||| |||||||    
T  30665964 aagctatcaaggatcattcgaggaaggcagagagtaaaacgacagtgcggaaaataaagga 30665904  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30620146 - 30620079
Alignment:
Q  118 acaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga 185  Q
    ||||| ||||||||||  |||||||| ||||||||||||||||||| || |||| ||||| |||||||    
T  30620146 acaagacaagctatcaaggatcattcgaggaaggcagagagcaaaaggaaagtgcggaaaataaagga 30620079  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30622767 - 30622700
Alignment:
Q  118 acaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga 185  Q
    ||||| ||||||||||  |||||||| ||||||||||||||||||| || |||| ||||| |||||||    
T  30622767 acaagacaagctatcaaggatcattcgaggaaggcagagagcaaaaggaaagtgcggaaaataaagga 30622700  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30625388 - 30625321
Alignment:
Q  118 acaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga 185  Q
    ||||| ||||||||||  |||||||| ||||||||||||||||||| || |||| ||||| |||||||    
T  30625388 acaagacaagctatcaaggatcattcgaggaaggcagagagcaaaaggaaagtgcggaaaataaagga 30625321  T

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