View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_58 (Length: 256)
Name: NF14234_low_58
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 13081206 - 13081058
Alignment:
| Q |
98 |
ggtagtgttaaacaattattattctctaaccgaggtaagtatttttcaatcaaaaccaaaagtattttatcttcatgtcacgtgtgttccggaatccatg |
197 |
Q |
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| T |
13081206 |
ggtagtgttaaacaattattattctctaaccgaggtaagtatttttcaatcaaaaccagaaatattttatcttcatgtcacgtgtgttccggaatccatg |
13081107 |
T |
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| Q |
198 |
cggattcacactacacgtcgtcaagatcatgcacacaacgcaagtataa |
246 |
Q |
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| T |
13081106 |
cggattcacactacacgtcgtcaagatcatgcacacaacgcaagtataa |
13081058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 13081472 - 13081403
Alignment:
| Q |
19 |
tcacatcatcacaattctatctcatggataactcaaggttaatttacaaagataataataaaataatata |
88 |
Q |
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| T |
13081472 |
tcacatcatcacaattctatctcatggataactcaaggttaatttacaaagataataataaaataatata |
13081403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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