View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_6 (Length: 530)
Name: NF14234_low_6
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Complemental strand, 30995490 - 30994977
Alignment:
| Q |
17 |
cacagagtgatctgaatcaaatggctgctgtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaag |
116 |
Q |
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| T |
30995490 |
cacagagtgatctgaatcaaatggctgctgtggcagacattgttgaccattttcaatggagagatgtgatagcaattttcatagatgatgatcatggaag |
30995391 |
T |
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| Q |
117 |
aaatgggatagctgcattaggtgataagctagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaata |
216 |
Q |
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| T |
30995390 |
aaatgggatagctgcattaggtgataagctagcagagaaacatagtaaaatatcatataaagcagctcttagacctgatcaactcaccactgatgaaata |
30995291 |
T |
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| Q |
217 |
aacaatgctttatttaaagtagctttgatggagtctagagtaattgtccttcatgtaacccttcattttggtctacaagtacttcacttggctcaatcac |
316 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30995290 |
aacaatgcattatttaaggtagctttgatggagtctagagtaattgtccttcatgtaacccttcattttggtctacaagtacttcacttggctcaatcac |
30995191 |
T |
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| Q |
317 |
atgaaatgatgggaagtggttatgcatggatagccactgattggctttctacgatactagattccgatccttcgttgtccacatctgcagcgatgaatga |
416 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
30995190 |
atgaaatgatgggaagtggttatgtatggatagccactgattggctttctacgatactagattccgatccttcgttgtccacatctgcaacaatgaatga |
30995091 |
T |
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| Q |
417 |
catgcaaggtgttatcaccttgaggatgtacacaccagaatcaaaaaacaaaagaaatttcacttctagatggaacagaaacctgagccataacataggt |
516 |
Q |
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| T |
30995090 |
catgcaaggtgttatcaccttgaggatgtacacaccagaatcaaaaaataaaagaaatttcacttctagatggaacagaaacctgagccataacataggt |
30994991 |
T |
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| Q |
517 |
tctgatcatgacca |
530 |
Q |
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| T |
30994990 |
tctgatcatgacca |
30994977 |
T |
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