View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_69 (Length: 223)

Name: NF14234_low_69
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_69
NF14234_low_69
[»] chr2 (5 HSPs)
chr2 (24-208)||(43660640-43660824)
chr2 (61-191)||(10136285-10136407)
chr2 (88-137)||(2586432-2586477)
chr2 (111-154)||(3769490-3769531)
chr2 (111-154)||(39906399-39906440)
[»] chr3 (5 HSPs)
chr3 (56-103)||(50913072-50913119)
chr3 (88-154)||(26158333-26158393)
chr3 (88-154)||(4043662-4043722)
chr3 (111-154)||(7848561-7848602)
chr3 (111-154)||(11460184-11460225)
[»] chr6 (8 HSPs)
chr6 (111-177)||(10315321-10315386)
chr6 (88-154)||(4184359-4184419)
chr6 (111-154)||(1370017-1370058)
chr6 (111-154)||(16599188-16599229)
chr6 (111-154)||(20755474-20755515)
chr6 (111-154)||(29646254-29646295)
chr6 (111-154)||(31132995-31133036)
chr6 (63-143)||(32889757-32889837)
[»] chr4 (7 HSPs)
chr4 (111-168)||(5046758-5046813)
chr4 (112-168)||(17745193-17745247)
chr4 (111-154)||(3818803-3818844)
chr4 (111-154)||(10216369-10216410)
chr4 (111-154)||(12584404-12584445)
chr4 (111-154)||(13211874-13211915)
chr4 (111-154)||(18470316-18470357)
[»] chr8 (5 HSPs)
chr8 (59-134)||(39934456-39934527)
chr8 (111-154)||(9483767-9483808)
chr8 (111-174)||(19971449-19971510)
chr8 (111-174)||(21021303-21021364)
chr8 (111-154)||(42556452-42556493)
[»] chr5 (3 HSPs)
chr5 (111-190)||(13676243-13676318)
chr5 (111-154)||(14795719-14795760)
chr5 (111-154)||(30688033-30688074)
[»] chr1 (4 HSPs)
chr1 (88-154)||(39424365-39424425)
chr1 (111-154)||(13943378-13943419)
chr1 (111-154)||(16960398-16960439)
chr1 (111-154)||(27389515-27389556)
[»] chr7 (8 HSPs)
chr7 (111-154)||(1325346-1325387)
chr7 (111-154)||(14777967-14778008)
chr7 (111-154)||(15230105-15230146)
chr7 (111-154)||(18199608-18199649)
chr7 (111-154)||(28605482-28605523)
chr7 (111-154)||(32852897-32852938)
chr7 (111-154)||(33889122-33889163)
chr7 (111-154)||(38876284-38876325)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 43660824 - 43660640
Alignment:
Q  24 tgcatgttgctaaaactccttctnnnnnnnncaaatgggtgtaagttagcaactcctaccagcgtttgctagaatacacctaactaattattttttagaa 123  Q
    ||||||||||||||| |||||||        |||||||||||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  43660824 tgcatgttgctaaaattccttctaaaaaaaacaaatgggtgtaagttagtaactcctacaagcgtttgctagaatacacctagctagttattttttagaa 43660725  T
Q  124 ggagtattttagcatgtgatgataactaaaacattggtaaatacaacctaatgtacatgttgttaaaacacacattcataaaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43660724 ggagtattttagcatgtgatgataactaaaacattggtaaatacaccctaatgtacatgttgttaaaacacacattcataaaaac 43660640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 10136407 - 10136285
Alignment:
Q  61 ggtgtaagttagcaactcctaccagcgtttgctagaatacacctaactaattattttttagaaggagtattttagcatgtgatgataactaaaacattgg 160  Q
    |||||||||||||||||||||  ||| || ||||||||||||||| |    |||||||||||| || |||||||| |||   || |||||||||  |||     
T  10136407 ggtgtaagttagcaactccta-gagcattagctagaatacacctagc----tattttttagaaagaatattttagaatg---tggtaactaaaaagttga 10136316  T
Q  161 taaatacaacctaatgtacatgttgttaaaa 191  Q
    |||||||| ||| |||| ||||||| |||||    
T  10136315 taaatacatcctcatgtgcatgttgctaaaa 10136285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 2586477 - 2586432
Alignment:
Q  88 tttgctagaatacacctaactaattattttttagaaggagtattttagca 137  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||    
T  2586477 tttgctagaatacacctac----ttattttttagaaggagtattttagca 2586432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 3769531 - 3769490
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  3769531 ttattttttagaaggagtattttagcaagtga--ataactaaaa 3769490  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 39906399 - 39906440
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  39906399 ttattttttagaaggagtattttagcaagtga--ataactaaaa 39906440  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 50913072 - 50913119
Alignment:
Q  56 aaatgggtgtaagttagcaactcctaccagcgtttgctagaatacacc 103  Q
    ||||||||||| |||||||||||||||  || ||||||||||||||||    
T  50913072 aaatgggtgtatgttagcaactcctacaggcatttgctagaatacacc 50913119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 26158333 - 26158393
Alignment:
Q  88 tttgctagaatacacctaactaattattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||     ||||||||||||||||||||||||||| ||||  ||||||||||    
T  26158333 tttgctagaatacacctac----ttattttttagaaggagtattttagcaagtga--ataactaaaa 26158393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 4043722 - 4043662
Alignment:
Q  88 tttgctagaatacacctaactaattattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    |||||||||||||||| ||||   |||||||||||||||||||||||||| ||||  ||||||||||    
T  4043722 tttgctagaatacacc-aact---tattttttagaaggagtattttagcaagtga--ataactaaaa 4043662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 7848602 - 7848561
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  7848602 ttattttttagaaggagtattttagcaagtga--ataactaaaa 7848561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 11460225 - 11460184
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  11460225 ttattttttagaaggagtattttagcaagtga--ataactaaaa 11460184  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 10315321 - 10315386
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaacattggtaaatacaacctaatgt 177  Q
    |||||||||||||||||||||||||||  |||  ||||||||||  ||| |||||||| ||||||||    
T  10315321 ttattttttagaaggagtattttagcaaatga-aataactaaaaggttgttaaatacaccctaatgt 10315386  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 4184359 - 4184419
Alignment:
Q  88 tttgctagaatacacctaactaattattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    |||||||||||||||| ||||   |||||||||||||||||||||||||| ||||  ||||||||||    
T  4184359 tttgctagaatacacc-aact---tattttttagaaggagtattttagcaagtga--ataactaaaa 4184419  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 1370017 - 1370058
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  1370017 ttattttttagaaggagtattttagcaagtga--ataactaaaa 1370058  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 16599188 - 16599229
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  16599188 ttattttttagaaggagtattttagcaagtga--ataactaaaa 16599229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 20755474 - 20755515
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  20755474 ttattttttagaaggagtattttagcaagtga--ataactaaaa 20755515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 29646295 - 29646254
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  29646295 ttattttttagaaggagtattttagcaagtga--ataactaaaa 29646254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 31132995 - 31133036
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  31132995 ttattttttagaaggagtattttagcaagtga--ataactaaaa 31133036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 32889757 - 32889837
Alignment:
Q  63 tgtaagttagcaactcctaccagcgtttgctagaatacacctaactaattattttttagaaggagtattttagcatgtgat 143  Q
    ||||||||| |||||||||  ||| ||||||||||| ||| ||  || |||||||||  ||  ||||||||||||||||||    
T  32889757 tgtaagttatcaactcctagaagcatttgctagaattcacatatatagttatttttttaaaaaagtattttagcatgtgat 32889837  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 5046758 - 5046813
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaacattggtaaataca 168  Q
    ||||||||||||||||||||||||||| ||||  |||||||||| || | ||||||||    
T  5046758 ttattttttagaaggagtattttagcaagtga--ataactaaaaaatggttaaataca 5046813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 17745247 - 17745193
Alignment:
Q  112 tattttttagaaggagtattttagcatgtgatgataactaaaacattggtaaataca 168  Q
    |||||||||||||||||||||||||| ||||  |||||||||| || | ||||||||    
T  17745247 tattttttagaaggagtattttagcaagtga--ataactaaaaaatggttaaataca 17745193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 3818844 - 3818803
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  3818844 ttattttttagaaggagtattttagcaagtga--ataactaaaa 3818803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 10216369 - 10216410
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  10216369 ttattttttagaaggagtattttagcaagtga--ataactaaaa 10216410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 12584404 - 12584445
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  12584404 ttattttttagaaggagtattttagcaagtga--ataactaaaa 12584445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 13211915 - 13211874
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  13211915 ttattttttagaaggagtattttagcaagtga--ataactaaaa 13211874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 18470357 - 18470316
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  18470357 ttattttttagaaggagtattttagcaagtga--ataactaaaa 18470316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 39934527 - 39934456
Alignment:
Q  59 tgggtgtaagttagcaactcctaccagcgtttgctagaatacacctaactaattattttttagaaggagtatttta 134  Q
    |||||||| |||||||||||||||  || |||||||||||||||| |||   ||||||||||||||| || |||||    
T  39934527 tgggtgtatgttagcaactcctacaggcatttgctagaatacacc-aac---ttattttttagaaggtgtgtttta 39934456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 9483767 - 9483808
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  9483767 ttattttttagaaggagtattttagcaagtga--ataactaaaa 9483808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 19971510 - 19971449
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaacattggtaaatacaacctaa 174  Q
    |||||||||||||||||||||||||||  |||  |||||||||| || | |||||||| |||||    
T  19971510 ttattttttagaaggagtattttagcaaatga--ataactaaaaaatggttaaatacaccctaa 19971449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 21021303 - 21021364
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaacattggtaaatacaacctaa 174  Q
    |||||||||||||||||||||||||||  |||  |||||||||| || | |||||||| |||||    
T  21021303 ttattttttagaaggagtattttagcaaatga--ataactaaaaaatggttaaatacaccctaa 21021364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 42556452 - 42556493
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  42556452 ttattttttagaaggagtattttagcaagtga--ataactaaaa 42556493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 13676243 - 13676318
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaacattggtaaatacaacctaatgtacatgttgttaaa 190  Q
    |||||||||| ||||||||||||||||||   ||||||||||||  ||| |||||||| | ||| |||||||||| ||||    
T  13676243 ttattttttaaaaggagtattttagcatg---tgataactaaaa-gttgctaaatacatcttaaggtacatgttgctaaa 13676318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 14795760 - 14795719
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  14795760 ttattttttagaaggagtattttagcaagtga--ataactaaaa 14795719  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 30688033 - 30688074
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  30688033 ttattttttagaaggagtattttagcaagtga--ataactaaaa 30688074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 39424365 - 39424425
Alignment:
Q  88 tttgctagaatacacctaactaattattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    |||||||||||||||| ||||   |||||||||||||||||||||||||| ||||  ||||||||||    
T  39424365 tttgctagaatacacc-aact---tattttttagaaggagtattttagcaagtga--ataactaaaa 39424425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 13943378 - 13943419
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  13943378 ttattttttagaaggagtattttagcaagtga--ataactaaaa 13943419  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 16960398 - 16960439
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  16960398 ttattttttagaaggagtattttagcaagtga--ataactaaaa 16960439  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 27389556 - 27389515
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  27389556 ttattttttagaaggagtattttagcaagtga--ataactaaaa 27389515  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 1325346 - 1325387
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  1325346 ttattttttagaaggagtattttagcaagtga--ataactaaaa 1325387  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 14778008 - 14777967
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  14778008 ttattttttagaaggagtattttagcaagtga--ataactaaaa 14777967  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 15230146 - 15230105
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  15230146 ttattttttagaaggagtattttagcaagtga--ataactaaaa 15230105  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 18199649 - 18199608
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  18199649 ttattttttagaaggagtattttagcaagtga--ataactaaaa 18199608  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 28605523 - 28605482
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  28605523 ttattttttagaaggagtattttagcaagtga--ataactaaaa 28605482  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 32852938 - 32852897
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  32852938 ttattttttagaaggagtattttagcaagtga--ataactaaaa 32852897  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 33889163 - 33889122
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  33889163 ttattttttagaaggagtattttagcaagtga--ataactaaaa 33889122  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 38876284 - 38876325
Alignment:
Q  111 ttattttttagaaggagtattttagcatgtgatgataactaaaa 154  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||    
T  38876284 ttattttttagaaggagtattttagcaagtga--ataactaaaa 38876325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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