View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_9 (Length: 503)
Name: NF14234_low_9
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 181 - 486
Target Start/End: Complemental strand, 29239024 - 29238719
Alignment:
| Q |
181 |
taattactaccaccaccgaggccaaggctacctaattcccgtccctttcttatccctaaaggctaaagttatatacctatttatttcaagtttatgtatc |
280 |
Q |
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| T |
29239024 |
taattactaccaccaccaaggccaaggctacctaattcccgtccctttcttatccctaaaggctaaagttatatacctatttatttcaagtttatgtatc |
29238925 |
T |
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| Q |
281 |
taacttttaatcttttgcatggaggaatattttcaatctgtcttttgttctgcatgtgtgataaagttaataatactacgcataaaatacctaagtaaca |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29238924 |
taacttttaatcttttgcatggaggaatattttcaatctgtcttttgttctgcatgtgtgataaagttaataatactacgcataaaatacctaagtaaca |
29238825 |
T |
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| Q |
381 |
agtcaagtaataatttataaaaaggtccaactttacttttatttttgggtaaactaggactccccaccttcttttaaaagatattccactataacatcca |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29238824 |
agtcaagtaataatttataaaaaggtccaactttacttttatttttgggtaaactaggactccccaccttcttttaaaagatattccactataacatcca |
29238725 |
T |
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| Q |
481 |
aagggt |
486 |
Q |
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| |||| |
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| T |
29238724 |
atgggt |
29238719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29239159 - 29239103
Alignment:
| Q |
1 |
gaaaatttaaagagaagaggatcaacaatcaagcaatatatattactttttatattc |
57 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29239159 |
gaaaacttaaagagaagagggtcaacaatcaagcaatatatattactttttatattc |
29239103 |
T |
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