View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_high_2 (Length: 525)
Name: NF14235_high_2
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 1960701 - 1960191
Alignment:
| Q |
1 |
tgcaaggttgattgtaagtggggcatgtagaggagatgcatatgtgaagtttcctagttggtatgatgtattcttgctgtatagggtttttgctccaaat |
100 |
Q |
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| T |
1960701 |
tgcaaggttgattgtaagtggggcatgtagaggagatgcatatgtgaagtttcctagttggtatgatgtattcttgctgtatagggtttttgctccaaat |
1960602 |
T |
|
| Q |
101 |
gttctcaattgggcatttaggcttcttatttccccacaagggacaaggagattttcttcttatttagggacaggaagatcccttgacactgtcactggtg |
200 |
Q |
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| T |
1960601 |
gttctcaattgggcatttaggcttcttatttccccacaagggacaaggagattttcttcttatttagggacaggaagatcccttgacaccgtcactggtg |
1960502 |
T |
|
| Q |
201 |
gtatggggagacctatgttggagggaacttctcctagacatcacacagggatggtaccacttacattctcaggccaattgggtcaccagatgcaacaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1960501 |
gtatggggagacctatgttggagggaacttctcctagacatcacacagggatggtaccacttacattctcaggccaattgagtcaccagatgcaacaaaa |
1960402 |
T |
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| Q |
301 |
gatggattgacttgaatgaagacatgtctatttgtgctagatactttgttttttcacttgtattaagtaatgttgcattcttgctagagtcatgctttgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960401 |
gatggattgacttgaatgaagacatgtctatttgtgctagatactttgttttttcacttgtattaagtaatgttgcattcttgctagagtcatgctttgt |
1960302 |
T |
|
| Q |
401 |
ggacctataatgtcatgtggttagtttcatacttgtgttaaacttgaaaataaacttgtactgaataccaaaaaa--ctctttgtttgaaccccatttcc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1960301 |
ggacctataatgtcatgtggttagtttcatacttgtgttaaaattgaaaataaacttgtactgaataccaaaaaactctctttgtttgaaccccatttcc |
1960202 |
T |
|
| Q |
499 |
ctcattttaag |
509 |
Q |
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| T |
1960201 |
ctcattttaag |
1960191 |
T |
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