View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14235_high_7 (Length: 238)

Name: NF14235_high_7
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14235_high_7
NF14235_high_7
[»] chr4 (2 HSPs)
chr4 (131-228)||(32267170-32267267)
chr4 (1-58)||(32267043-32267100)
[»] chr5 (1 HSPs)
chr5 (5-57)||(19301508-19301560)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 32267170 - 32267267
Alignment:
Q  131 ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267170 ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg 32267267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32267043 - 32267100
Alignment:
Q  1 agaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267043 agaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt 32267100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
Q  5 tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt 57  Q
    |||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  19301508 tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt 19301560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University