View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_high_9 (Length: 219)
Name: NF14235_high_9
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1005889 - 1005965
Alignment:
| Q |
1 |
aatttaatagataaaaagtgcaaaaacaaa-gttaaatcaattctctgaaataaatcgctgaagattcatgcatcct |
76 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1005889 |
aatttaatagataaaaagtgcaaaaacaaaagttaaatcaattctctgaaataaatcgctgaagattcatgcatcct |
1005965 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 1006030 - 1006093
Alignment:
| Q |
141 |
tcaattttgggtcttctagtggtagatgtatcgtctccatcaagatcaatcacgcccaataagt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006030 |
tcaattttgggtcttctagtggtagatgtatcgtctccatcaagatcaatcacgcccaataagt |
1006093 |
T |
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