View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_low_10 (Length: 265)
Name: NF14235_low_10
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 53403650 - 53403889
Alignment:
| Q |
1 |
caataagatcccaattttttgtgattaaatacacacccacagtcaggcccaacccaatacctttcaatttcatcatgttgagtctgagagacacaacact |
100 |
Q |
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| T |
53403650 |
caataagatcccaattttttgtgatgaaatacacacccacagtcaggcccaacccaatacatttcaatttcatcatgttgagtctgagagacacaacact |
53403749 |
T |
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| Q |
101 |
ttcttatagccagaatcccaacataaa--gtgtttatgtgtgcccaaatagagtgttcaaacgcttgtgaccaagaaagcattttgcctatttttcaatt |
198 |
Q |
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| T |
53403750 |
ttcttatagccagaatcccaacataaagtgtgtgtatgtgtgcccaaatagagtgttcaaacgcttgtgaccaagaaagcattttgcctatttttcaatt |
53403849 |
T |
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| Q |
199 |
gacgaatactggtgtatactattgctgcatatatacatac |
238 |
Q |
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| T |
53403850 |
gacgaatactggtgtatactattgctgcatacatacatac |
53403889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 53375273 - 53375102
Alignment:
| Q |
78 |
ttgagtctgagagacacaacactttcttatagccagaatcccaacataaagtgtttatgtgtgcccaaatagagtgttcaaacgcttgtgaccaagaaag |
177 |
Q |
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| T |
53375273 |
ttgagtctgagagacacaacactttcttatagccagaatcccaacataaagtgtgtatgtgtgcccaaataaagtgttcaaacgcttgtgaccaagaaag |
53375174 |
T |
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| Q |
178 |
cattttgcctatttttcaattgacgaatactggtgtatactattgctgcatatatacatacataccttcattgtct |
253 |
Q |
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| T |
53375173 |
cattttgcctatttttcaattgacaaatactggtgtatactatagctgc----atacatacataccttcattgtct |
53375102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 53376035 - 53375974
Alignment:
| Q |
15 |
ttttttgtgattaaatacacacccacagtcaggcccaacccaatacctttcaatttcatcat |
76 |
Q |
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| T |
53376035 |
ttttttgtgataaaatacacacccacagtcaggcccaacccaatgcctttaaatttcatcat |
53375974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 11392324 - 11392358
Alignment:
| Q |
78 |
ttgagtctgagagacacaacactttcttatagcca |
112 |
Q |
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| T |
11392324 |
ttgagtctgagagacacaacactttcttatagcca |
11392358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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