View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_low_12 (Length: 239)
Name: NF14235_low_12
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 53376414 - 53376216
Alignment:
| Q |
18 |
acctcttgattcgtgcggctgca-taacgctccgctgaagaaggaaaaacagaaaacagagcattcctctctccttcaagttccggtttgaacctctgac |
116 |
Q |
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| T |
53376414 |
acctcttgattcgtgcggctgcaataacgctccgctgaagagggaaaaacagaaaacagagcattcctctctccttcaagttccggtttgaacctctgac |
53376315 |
T |
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| Q |
117 |
aaagaatcatcctccgtttccatcttcattcttcactcctaaaacagaggttctcccattctttccatcttccttcatatttttatatgaatatgaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53376314 |
gaagaatcatcctccgtttccatcttcattcttcactcctaaaacagaggttctccccttctttccatcttccttcatatttttatatgaatatgaata |
53376216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 48 - 215
Target Start/End: Original strand, 53403309 - 53403476
Alignment:
| Q |
48 |
ccgctgaagaaggaaaaacagaaaacagagcattcctctctccttcaagttccggtttgaacctctgacaaagaatcatcctccgtttccatcttcattc |
147 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53403309 |
ccgctgaagagggaaaaacagaaaacagagcattcctctctccttcaagttccggtttgaacctctgacgaagaatcatcctccgtttccatcttcattc |
53403408 |
T |
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| Q |
148 |
ttcactcctaaaacagaggttctcccattctttccatcttccttcatatttttatatgaatatgaata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53403409 |
ttcactcctaaaacagaggttctcccattctttccatcttccttcatatttttatatgaatatgaata |
53403476 |
T |
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