View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14235_low_13 (Length: 238)

Name: NF14235_low_13
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14235_low_13
NF14235_low_13
[»] chr4 (2 HSPs)
chr4 (131-228)||(32267170-32267267)
chr4 (1-58)||(32267043-32267100)
[»] chr5 (1 HSPs)
chr5 (5-57)||(19301508-19301560)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 32267170 - 32267267
Alignment:
Q  131 ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267170 ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg 32267267  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32267043 - 32267100
Alignment:
Q  1 agaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267043 agaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt 32267100  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
Q  5 tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt 57  Q
    |||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  19301508 tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt 19301560  T

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