View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_low_3 (Length: 432)
Name: NF14235_low_3
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 32266640 - 32266822
Alignment:
| Q |
25 |
ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttccatctcagaaacagatgaagaaccgccattaacagaagaagaagaagg |
124 |
Q |
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| T |
32266640 |
ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttccatctcagaaacagatgaagaaccaccattaacagaagaagaagaagg |
32266739 |
T |
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| Q |
125 |
ttgatgatttgaaagagtaatagacttgaacctaattcttctcttagatttccttagattcattgttgtagcagcaacacaaa |
207 |
Q |
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| T |
32266740 |
ttgctgatttgaaagagtaatagacttgaacctaattcttctcttagatttccttagattcattgttgtagcagcaacacaaa |
32266822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 234 - 400
Target Start/End: Original strand, 32266852 - 32267018
Alignment:
| Q |
234 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctt |
333 |
Q |
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| T |
32266852 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctt |
32266951 |
T |
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| Q |
334 |
tcccacattctttgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagcagcagc |
400 |
Q |
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| T |
32266952 |
tcccacattctttgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagtagcagc |
32267018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 19301397 - 19301476
Alignment:
| Q |
276 |
tctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaattt |
355 |
Q |
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| T |
19301397 |
tctttctcagagtgacaagccatgtgaccacacagtgctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
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