View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14235_low_6 (Length: 388)
Name: NF14235_low_6
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 206 - 382
Target Start/End: Original strand, 4803416 - 4803592
Alignment:
| Q |
206 |
atccatgtttacaattcacgacagagagtattaatcaaataaaaaagtgtgaagcaacataactacaagatatgaaataacatatagtataccttaattc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803416 |
atccatgtttacaattcacgacagagagtattaatcaaataaaaaagtgtgaagcaacataactacaagatatgaaataacatatagtataccttaattc |
4803515 |
T |
|
| Q |
306 |
caacgttgtattgtctgccttttccttgagatccttaggaattggaccagaaagcttgtttcccgttagattgctac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803516 |
caacgttgtattgtctgccttttccttgagatccttaggaattggaccagaaagcttgtttcccgttagattgctac |
4803592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 4803213 - 4803358
Alignment:
| Q |
3 |
atagtcacacggttcgcaattcattttgatatgcagtactggtttttcgaagttatcagtaatattgaaaatttcaacatcaagatattatcccaatttt |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4803213 |
atagtcacacggttcgcaatttattttgatatgcagtactggtttttcgaagttatcagtaatattgagaatttcaacatcaagatattatcccaatttt |
4803312 |
T |
|
| Q |
103 |
aatttctagaatagcatgtttattcattaataatactgaattagga |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4803313 |
aatttctagaatagcatgtttattcattaataatactgaattagga |
4803358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 218 - 382
Target Start/End: Original strand, 4848499 - 4848656
Alignment:
| Q |
218 |
aattcacgacagagagtattaatcaaataaaaaagtgtgaagcaacataactacaagatatgaaataacatatagtataccttaattccaacgttgtatt |
317 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
4848499 |
aattcatgacagagggtattaatcaaataaaaaagtgcgaagcaacataactacaatatatgaaataacata-------ccttaattccaacgttttatt |
4848591 |
T |
|
| Q |
318 |
gtctgccttttccttgagatccttaggaattggaccagaaagcttgtttcccgttagattgctac |
382 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4848592 |
gtctgccttttgcttgagatccttaggaattggactagaaagcttgtttcccgttagattgctac |
4848656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 4828651 - 4828703
Alignment:
| Q |
330 |
cttgagatccttaggaattggaccagaaagcttgtttcccgttagattgctac |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4828651 |
cttgagatccttaggaattggaccagaaagcctgtttcccgttagattgctac |
4828703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 4848375 - 4848438
Alignment:
| Q |
85 |
agatattatcccaattttaatttctagaatagcatgtttattcattaataatactgaattagga |
148 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||| | || |||||||| |
|
|
| T |
4848375 |
agatattatcccaattttagtttctagaatatcatgtttattcattgatagttctcaattagga |
4848438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 382
Target Start/End: Original strand, 4793151 - 4793238
Alignment:
| Q |
292 |
gtataccttaattccaacgttgtattgtctgccttttccttgagatccttaggaattggaccagaaagcttgtttcccgttagattgctac |
382 |
Q |
| |
|
||||||||||||| ||| |||| || ||||||||| ||| ||| | || ||||| | |||||| ||||| ||||||||||||||||||| |
|
|
| T |
4793151 |
gtataccttaattgcaaagttgaat---ctgcctttttctttagagcatttggaatcgaaccagagagcttatttcccgttagattgctac |
4793238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University