View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_low_8 (Length: 343)
Name: NF14235_low_8
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 27 - 280
Target Start/End: Original strand, 7534509 - 7534768
Alignment:
| Q |
27 |
tgattatattcaattaattcatttacttgtgtcgacatgtctgtgt------aagtagagatttgaagttaagaactactaccatttggaggaggaatag |
120 |
Q |
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| T |
7534509 |
tgattatattcaattaattcatttacttgtgtcgacgtgtctgtgtcaatgtaattagagatttgaagttaagaactactaccatttggaagaagaatag |
7534608 |
T |
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| Q |
121 |
agacaacgatctgtgagttgacgaattgcgatgcgaagttcgcttctgcaactttcttttgaactcattttgagtatgccaacgatgttacctactcctg |
220 |
Q |
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| T |
7534609 |
agacaacgatctgtgagttgacgaattgcgatgcgaagttcgcttctgcaactttcttttgaactcattttgagtatgccaacgatgttacctactcctg |
7534708 |
T |
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| Q |
221 |
ctttttcaaattgttcactccaaatcagttaattaatacttctctaatttacaacggaaa |
280 |
Q |
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| T |
7534709 |
ctttttcaaattgttcactccaaatcagttaattaatacttctctaatttacaacggaaa |
7534768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 46965083 - 46965171
Alignment:
| Q |
100 |
taccatttggaggaggaatagagacaacgatctgtgagttgacgaattgcgatgcgaagttcgcttctgcaactttcttttgaactcat |
188 |
Q |
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| T |
46965083 |
taccatttggaagcggaatagagacaacgattgctgagttgacgaattgcgatgcgaagttcgcttctgcaactttctttcgaactcat |
46965171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35993625 - 35993674
Alignment:
| Q |
1 |
accaacacgccaccggtacatgtggttgattatattcaattaattcattt |
50 |
Q |
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| T |
35993625 |
accaacacgacaccggtacatgtgattgattacattcaattaatccattt |
35993674 |
T |
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