View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14235_low_9 (Length: 318)
Name: NF14235_low_9
Description: NF14235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14235_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 46094483 - 46094787
Alignment:
| Q |
18 |
aagacaaaagtgtgaatttggatatatggaaatcaatgatggcttgatgaaaacaaaggcaggaagcataatcgcatgacacaggcatgaaaagaaaaca |
117 |
Q |
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| T |
46094483 |
aagacaaaagtgtgaatttggatatatggaaatcaatgatggcttgatgaaaacaaaggcaggaagcataatcgcatgacacaggcatgaaaagaaaaca |
46094582 |
T |
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| Q |
118 |
aaggcatcaaggctttatggaaagcaaaaacacaa----acgttcaggaaagcaaaacttaccgaacgacatcaatacactcactacggaaagtcagcgg |
213 |
Q |
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| T |
46094583 |
aaggcatcaaggctttatggaaagcaaaaacacaaacaaacgttcaggaaagcaaaacttaccgaacgacatcaatacactcactacggaaagtcagcgg |
46094682 |
T |
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| Q |
214 |
cgctaaccctaggagagaatcgttaatcatacctctcttattgttatcgtaagatatatttcataatattcctctcatgaacaaaatatggtgagggcac |
313 |
Q |
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| T |
46094683 |
cgctaaccctaggagagaattgttaatcatacctctcttattgttattgtaaaatatatttcataatattcctctcatgaacaaaatatggtgagggcac |
46094782 |
T |
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| Q |
314 |
caacc |
318 |
Q |
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| T |
46094783 |
caacc |
46094787 |
T |
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