View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_10 (Length: 612)
Name: NF14236_high_10
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 54 - 594
Target Start/End: Original strand, 33462771 - 33463313
Alignment:
| Q |
54 |
tccacttgtcttgagtaattttcagtaaccaatactaagttattatttcattgaagttgaattcatcataactatctgaatttgaaccatagaacaattt |
153 |
Q |
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| T |
33462771 |
tccacttgtcttgagtaattttcgataaccaatactaagttattatttcattgaagttgaattcatcataagtatctgaatttgaaccatagaacaattt |
33462870 |
T |
|
| Q |
154 |
tacaaagccccaatctgttgagttgttaatccatgaagtgaataaaagcaagttaaaattggataagctttgtttgagaaaattatttagttggttaagt |
253 |
Q |
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| T |
33462871 |
tacaatgccccaatctgttgagttgttaatccatgaagtgaataaaagcaagttaaaattggataagctttgtttgagaaaattatttagttgattaagc |
33462970 |
T |
|
| Q |
254 |
tagtttcttaactaacaatttaccatataaataagttgtacaattcaccattcattaaccaatgaaaacattgttacaacaaactcttatcttcatcata |
353 |
Q |
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| T |
33462971 |
tagtttcttaactaacaatttaccatataaataagttgtacaattcaccattcattaaccaatgaaaacattgttacaacaaactcttatcttcatcata |
33463070 |
T |
|
| Q |
354 |
tctcaaattcatcatcattctatatatattatttctttttcattgacttcttgcaatatgcaagaaatgtgtgatgcgcaaacagttggcatcaagagtt |
453 |
Q |
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| T |
33463071 |
tctcaaattcatcatcattctatatatattatttctttttcattgacttcttgcaatatgcaagaaatgtgtgatgcgcaaacagttggcatcaagagtt |
33463170 |
T |
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| Q |
454 |
ttgggttctgattttgggaaacatgagatgttaatctctgggagaaacgagtgaa--gtgtgtgtgatttcataatttcttgcaaagtggtcataaatag |
551 |
Q |
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| T |
33463171 |
ttggattctgattttgggaaacatgagatgttaatctctgggagaaacgagtgaagtgtgtgtgtgatttcataatttcttgcaaagtagtcataaatag |
33463270 |
T |
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| Q |
552 |
gaatgttgttgattcttggtgggagtaattggaaacgtagaat |
594 |
Q |
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| T |
33463271 |
gaatgttgttgattcttggtgggagtaattggaaacgtagaat |
33463313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 46493608 - 46493439
Alignment:
| Q |
171 |
ttgagttgttaatccatgaagtgaataaaagcaagttaaaattggataagctttgtttgagaaaattatttagttggttaagttagtttcttaactaaca |
270 |
Q |
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| T |
46493608 |
ttgagttgttaatccattaagtgaataaaatttagtaagaataggataaggtttgttt-agaaaattagttggtttgttaaactaatt-cttaactaaca |
46493511 |
T |
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| Q |
271 |
atttacca-tataaataagttgtacaattcaccattcattaaccaatgaaaa-cattgttacaacaaactct |
340 |
Q |
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| T |
46493510 |
agttacttctagaaataagttgtaaaattcaccattcagtaactaatgaaaagtatagttacaacaaactct |
46493439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 538
Target Start/End: Complemental strand, 46493249 - 46493211
Alignment:
| Q |
500 |
acgagtgaagtgtgtgtgatttcataatttcttgcaaag |
538 |
Q |
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| T |
46493249 |
acgagtgaagtgtgtttgatttcataatttcttgcaaag |
46493211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 16534636 - 16534582
Alignment:
| Q |
428 |
tgcgcaaacagttggcatcaagagttttgggttctgattttgggaaacatgagat |
482 |
Q |
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| T |
16534636 |
tgcgctaacaattgacatcaatagctttgggttctgattttgggaaacatgagat |
16534582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 534
Target Start/End: Original strand, 2799436 - 2799484
Alignment:
| Q |
486 |
aatctctgggagaaacgagtgaagtgtgtgtgatttcataatttcttgc |
534 |
Q |
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| T |
2799436 |
aatctctgggaaacacgagtgaaatctgtgtgatttcataatttcttgc |
2799484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 534
Target Start/End: Original strand, 36020175 - 36020223
Alignment:
| Q |
486 |
aatctctgggagaaacgagtgaagtgtgtgtgatttcataatttcttgc |
534 |
Q |
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||||||||||| | ||||||||||||||||||| |||| |||||||||| |
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| T |
36020175 |
aatctctgggaaacacgagtgaagtgtgtgtgaattcagaatttcttgc |
36020223 |
T |
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