View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_high_11 (Length: 591)

Name: NF14236_high_11
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_high_11
NF14236_high_11
[»] chr3 (4 HSPs)
chr3 (8-553)||(40361937-40362492)
chr3 (86-201)||(1699932-1700048)
chr3 (406-448)||(36038598-36038640)
chr3 (406-461)||(1590412-1590467)
[»] chr6 (2 HSPs)
chr6 (90-203)||(32549402-32549516)
chr6 (140-201)||(33013021-33013082)
[»] chr2 (7 HSPs)
chr2 (86-201)||(29927764-29927879)
chr2 (133-201)||(35426490-35426558)
chr2 (87-125)||(42013427-42013465)
chr2 (407-458)||(33292973-33293024)
chr2 (134-183)||(32979086-32979135)
chr2 (392-461)||(35792157-35792226)
chr2 (86-157)||(35494925-35494997)
[»] chr7 (6 HSPs)
chr7 (86-202)||(33487182-33487299)
chr7 (135-201)||(1256801-1256867)
chr7 (401-461)||(26881636-26881696)
chr7 (86-173)||(41639724-41639812)
chr7 (86-178)||(21836000-21836092)
chr7 (398-458)||(3660455-3660515)
[»] chr4 (7 HSPs)
chr4 (130-201)||(47533818-47533889)
chr4 (90-173)||(19401743-19401827)
chr4 (141-201)||(29010113-29010173)
chr4 (403-446)||(27048789-27048832)
chr4 (140-183)||(40197919-40197962)
chr4 (393-447)||(17629421-17629475)
chr4 (90-201)||(9675009-9675121)
[»] chr1 (8 HSPs)
chr1 (87-201)||(31507298-31507413)
chr1 (133-200)||(37543859-37543926)
chr1 (141-201)||(33150313-33150373)
chr1 (90-183)||(3360386-3360480)
chr1 (400-434)||(16752776-16752810)
chr1 (88-201)||(28190485-28190599)
chr1 (86-126)||(33150377-33150417)
chr1 (130-186)||(51232520-51232576)
[»] chr5 (4 HSPs)
chr5 (142-202)||(39043607-39043667)
chr5 (398-446)||(40438609-40438657)
chr5 (392-455)||(40918950-40919013)
chr5 (401-437)||(18293839-18293875)
[»] chr8 (1 HSPs)
chr8 (134-201)||(34646288-34646355)


Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Original strand, 40361937 - 40362492
Alignment:
Q  8 agcataggcccaatagcaacatggatttgaaaattgctgtttccagatcaaaagttgctaggaaataccacaaaa---------gttgcagttaactgtc 98  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||||||||||||||||    
T  40361937 agcataagcccaatagcaacatggatttgaaaattgctgtttccagatcaaaagttgctaggaaacaccacaaaattattaaaagttgcagttaactgtc 40362036  T
Q  99 gatagattttaaccgatgatagttaactatca-tgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaat 197  Q
    ||| |||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  40362037 gatggattttaaccgacggtagttaactatcaatgaaatttggggttaaatttttcattttatggtgtttcttagcattgtatgaaatgtgaaaggcaat 40362136  T
Q  198 tttctatggatttttcttgcttaagcacatgatggatccgtaagattttttctacaggtcatacaacaaaattcaaaatcgccaaagagggagtgctatg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40362137 tttctatggatttttcttgcttaagcacatgatggatccgtaagattttttccacaggtcatacaacaaaattcaaaatcgccaaagagggagtgctatg 40362236  T
Q  298 aacattttattcttaaaactctctctaacacctacccgtctttatatgtatatagaataagagattaattttcataaaccgacaatgtaaatgtttttta 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  40362237 aacattttattcttaaaactctctctaacacctacccgtctttatatgtatatagaataagagattaattttcataaaccgacggtgtaaatgtttttta 40362336  T
Q  398 acacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacatatcactgacaagtttaatctctaaaaataacacatta 497  Q
     |||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40362337 gcacatgcatttaatcaaatcatatcaaatagatatttttaaagatattttacaaactaacatatcactgacaagtttaatctctaaaaataacacatta 40362436  T
Q  498 gctttagacaatatgtttatttcatttgatttatctttttacttcttttgaactaa 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40362437 gctttagacaatatgtttatttcatttgatttatctttttacttcttttgaactaa 40362492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 86 - 201
Target Start/End: Complemental strand, 1700048 - 1699932
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaa 184  Q
    ||||||||||||| || ||||||||| || | ||||||||   | ||| |||||  |||||||||| | ||||  ||||||||||||||||||||||||     
T  1700048 gcagttaactgtcaatggattttaactgacggtagttaacggccgatggaatttgaggttaaatttgttatttcatggtgtttcttagcattgtgtgaag 1699949  T
Q  185 tgtgaaaggcaattttc 201  Q
    |||||||| ||||||||    
T  1699948 tgtgaaagacaattttc 1699932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 36038598 - 36038640
Alignment:
Q  406 attcaatcaaatcatatcaaatagatatttttagagatatttt 448  Q
    ||||||||||||||| |||||||||||||| ||||||||||||    
T  36038598 attcaatcaaatcatgtcaaatagatatttatagagatatttt 36038640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 1590467 - 1590412
Alignment:
Q  406 attcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacata 461  Q
    |||||||||||| |||| ||||| ||||||||| |||||||||| ||| |||||||    
T  1590467 attcaatcaaattatataaaataaatatttttaaagatattttaagaattaacata 1590412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 32549516 - 32549402
Alignment:
Q  90 ttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtg 188  Q
    ||||||| ||||  ||||||||||| |||||||||||| | ||||||||| |||||||| || ||||||  |||||||||||||||||||||||||||||    
T  32549516 ttaactgccgatgaattttaaccgacgatagttaactaccgatgaaatttggggttaaacttgtcatttaatggtgtttcttagcattgtgtgaaatgtg 32549417  T
Q  189 aaaggcaattttcta 203  Q
    |||  ||||||||||    
T  32549416 aaaaacaattttcta 32549402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 33013082 - 33013021
Alignment:
Q  140 gggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    ||||||||||| ||||||| ||||||||| ||| |||| ||||| || |||| |||||||||    
T  33013082 gggttaaatttatcattttatggtgtttcatagtattgcgtgaagtgcgaaaagcaattttc 33013021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 29927764 - 29927879
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaactatcatgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaat 185  Q
    |||||||||||  ||| |||||||||||| |||||||||||   ||||||||| ||||||||||| ||||||  ||||  || ||||||||||||||| |    
T  29927764 gcagttaactgctgatggattttaaccgacgatagttaactccgatgaaatttggggttaaatttatcatttcatggtaatttttagcattgtgtgaagt 29927863  T
Q  186 gtgaaaggcaattttc 201  Q
    ||||||||||||||||    
T  29927864 gtgaaaggcaattttc 29927879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 35426490 - 35426558
Alignment:
Q  133 aaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||| ||||| ||||||| |||||||||    
T  35426490 aaatttagagttaaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 35426558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 42013427 - 42013465
Alignment:
Q  87 cagttaactgtcgatagattttaaccgatgatagttaac 125  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42013427 cagttaactgtcgataaattttaaccgatgatagttaac 42013465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 33293024 - 33292973
Alignment:
Q  407 ttcaatcaaatcatatcaaatagatatttttagagatattttacgaactaac 458  Q
    |||||||||||| ||| |||||||||||| || |||||||||| ||||||||    
T  33293024 ttcaatcaaatcgtataaaatagatatttgtaaagatattttatgaactaac 33292973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 32979086 - 32979135
Alignment:
Q  134 aatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaa 183  Q
    ||||| ||||||||||| ||||||| || |||||||||||||| ||||||    
T  32979086 aatttggggttaaatttatcattttatgatgtttcttagcattttgtgaa 32979135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 35792226 - 35792157
Alignment:
Q  392 tttttaacacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacata 461  Q
    ||||| ||| ||||||||||| |||| ||||||| ||||||||  || | |||||||| |||||||||||    
T  35792226 ttttttacaaatgcattcaataaaataatatcaagtagatattcgtacatatattttaagaactaacata 35792157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 35494997 - 35494925
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattt 157  Q
    ||||||||||| ||||  ||||||||||||| || ||||||||| |||||||||  | |||||||| ||||||    
T  35494997 gcagttaactgccgatgaattttaaccgatggtaattaactatcgatgaaatttgagattaaatttgtcattt 35494925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 33487299 - 33487182
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaa 184  Q
    ||||||||||| ||||  |||||||||| ||||||||||||| | ||  |||||   ||||||||| | ||||| |||||||||||||||||| || ||     
T  33487299 gcagttaactgccgatgaattttaaccgctgatagttaactaccgatagaatttgaagttaaatttgttattttatggtgtttcttagcattgagtaaag 33487200  T
Q  185 tgtgaaaggcaattttct 202  Q
    ||||||| ||||||||||    
T  33487199 tgtgaaaagcaattttct 33487182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 1256801 - 1256867
Alignment:
Q  135 atttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    ||||| |||||||||| ||||||| |||||||| ||||||| ||||| | |||||||||||||||||    
T  1256801 atttaaggttaaatttatcattttatggtgtttattagcatcgtgtggagtgtgaaaggcaattttc 1256867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 26881696 - 26881636
Alignment:
Q  401 catgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaacata 461  Q
    |||||||||||||||||||  ||| ||| |||||||| |||||||||||| | ||||||||    
T  26881696 catgcattcaatcaaatcacgtcatatatatattttttgagatattttacaagctaacata 26881636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 41639724 - 41639812
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagc 173  Q
    ||||||||| |||||| || ||||||||||| ||||||||| || ||| || || ||||||||||| ||||||| |||| ||| |||||    
T  41639724 gcagttaacggtcgatcgagtttaaccgatggtagttaactgtcgatggaaattggggttaaatttgtcattttatggtcttttttagc 41639812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 21836092 - 21836000
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagcattgt 178  Q
    |||||||||||| ||| | |||||||||| || |||||||| || ||||||||  || ||||| || |||||| || |||||||||||||||||    
T  21836092 gcagttaactgttgatggtttttaaccgacgacagttaactgtcgatgaaattcgggcttaaa-ttgtcatttactagtgtttcttagcattgt 21836000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 3660515 - 3660455
Alignment:
Q  398 acacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaactaac 458  Q
    |||||||||| | ||||||||||  ||||| ||||| | ||||||||||||| ||||||||    
T  3660515 acacatgcatcctatcaaatcatgacaaattgatatatgtagagatattttaggaactaac 3660455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 47533818 - 47533889
Alignment:
Q  130 atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    |||||||||  |||||||||| ||||||  | |||||||||||||||| ||||| |||||||||||||||||    
T  47533818 atgaaatttgaggttaaatttatcatttaattgtgtttcttagcattgcgtgaagtgtgaaaggcaattttc 47533889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 19401743 - 19401827
Alignment:
Q  90 ttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagc 173  Q
    ||||||| ||||||||||||||||| | |||||||||  | | |||| || ||||||||||| ||||||| ||||||||||||||    
T  19401743 ttaactgccgatagattttaaccgacggtagttaactgccgaagaaaattggggttaaatttatcattttatggtgtttcttagc 19401827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 29010113 - 29010173
Alignment:
Q  141 ggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    |||||||||| ||||||| ||||||||||||||||||  |||| ||||||| ||| |||||    
T  29010113 ggttaaatttgtcattttatggtgtttcttagcattgaatgaagtgtgaaaagcatttttc 29010173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 27048789 - 27048832
Alignment:
Q  403 tgcattcaatcaaatcatatcaaatagatatttttagagatatt 446  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||    
T  27048789 tgcatccaatcaaatcatatcaagtagatagttttagagatatt 27048832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 40197919 - 40197962
Alignment:
Q  140 gggttaaatttttcattttctggtgtttcttagcattgtgtgaa 183  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||    
T  40197919 gggttaaatttatcattttatagtgtttcttagcattgtgtgaa 40197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 447
Target Start/End: Original strand, 17629421 - 17629475
Alignment:
Q  393 ttttaacacatgcattcaatcaaatcatatcaaatagatatttttagagatattt 447  Q
    |||| |||||||| | |||| ||||||||  ||||||||||||||||||||||||    
T  17629421 tttttacacatgcttccaattaaatcatacaaaatagatatttttagagatattt 17629475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 201
Target Start/End: Original strand, 9675009 - 9675121
Alignment:
Q  90 ttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtg 188  Q
    ||||||| || | ||||||||| || || || |||||||| || ||||||||||||||| || | ||||  | |||||||||| | ||||||||| || |    
T  9675009 ttaactgccgctggattttaactgacgacagataactatcgataaaatttagggttaaacttgtgatttcatagtgtttcttaactttgtgtgaagtgag 9675108  T
Q  189 aaaggcaattttc 201  Q
    ||| |||||||||    
T  9675109 aaaagcaattttc 9675121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 31507298 - 31507413
Alignment:
Q  87 cagttaactgtcgatagattttaaccgatgatagttaactatc-atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaat 185  Q
    |||||||||| || |  |||||||||||||||||||||||| | ||  |||||| ||||||| || ||||||  |||||||||||||  |||||||||||    
T  31507298 cagttaactgccgttgaattttaaccgatgatagttaactaccgatagaatttaaggttaaacttatcatttcatggtgtttcttagttttgtgtgaaat 31507397  T
Q  186 gtgaaaggcaattttc 201  Q
    | ||||  ||||||||    
T  31507398 gggaaaaacaattttc 31507413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 37543859 - 37543926
Alignment:
Q  133 aaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaatttt 200  Q
    |||||||||||||||||||||||||| | ||||| ||||| |||| ||||| |||||||  |||||||    
T  37543859 aaatttagggttaaatttttcattttatagtgttccttagtattgagtgaagtgtgaaaaacaatttt 37543926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 33150373 - 33150313
Alignment:
Q  141 ggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    |||||||||| ||||||| | |||||||||||||| |||| || ||||||| |||||||||    
T  33150373 ggttaaatttgtcattttatagtgtttcttagcatcgtgtaaattgtgaaatgcaattttc 33150313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 3360480 - 3360386
Alignment:
Q  90 ttaactgtcgatagattttaaccgatgatagttaacta-tcatgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaa 183  Q
    ||||||| || || ||||||||||||  |||||||||| |  |||||||| |||||||| || ||||||  |||||||||||| | |||||||||    
T  3360480 ttaactgccgctatattttaaccgatagtagttaactactgttgaaattttgggttaaacttgtcatttcatggtgtttcttaactttgtgtgaa 3360386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 16752810 - 16752776
Alignment:
Q  400 acatgcattcaatcaaatcatatcaaatagatatt 434  Q
    ||||||||||||||||||||||| |||||||||||    
T  16752810 acatgcattcaatcaaatcatattaaatagatatt 16752776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 28190599 - 28190485
Alignment:
Q  88 agttaactgtcgatagattttaaccgatgatagttaacta-tcatgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatg 186  Q
    ||||||||  || ||||||||||||   | |||||||||| | |||||||||  ||||||| || ||||||  ||||||||||| || ||||||||| ||    
T  28190599 agttaactaccgctagattttaaccagcggtagttaactactgatgaaatttgaggttaaacttgtcatttcatggtgtttctttgctttgtgtgaagtg 28190500  T
Q  187 tgaaaggcaattttc 201  Q
     |||| |||||||||    
T  28190499 ggaaaagcaattttc 28190485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 33150417 - 33150377
Alignment:
Q  86 gcagttaactgtcgatagattttaaccgatgatagttaact 126  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  33150417 gcagttaactgccaatatattttaaccgatgatagttaact 33150377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 51232576 - 51232520
Alignment:
Q  130 atgaaatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatg 186  Q
    |||||||||||||||||||||  |||||   ||||||||||| | ||||||||||||    
T  51232576 atgaaatttagggttaaatttgacatttcacggtgtttcttaactttgtgtgaaatg 51232520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 39043607 - 39043667
Alignment:
Q  142 gttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttct 202  Q
    ||||||||| || |||  |||||||||||||||||||||||| ||| ||||||||||||||    
T  39043607 gttaaatttgtcctttcatggtgtttcttagcattgtgtgaagtgtaaaaggcaattttct 39043667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 40438609 - 40438657
Alignment:
Q  398 acacatgcattcaatcaaatcatatcaaatagatatttttagagatatt 446  Q
    |||||||||| |||||||||||| |||||||||||||| |||| |||||    
T  40438609 acacatgcatccaatcaaatcatgtcaaatagatatttgtagaaatatt 40438657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 40919013 - 40918950
Alignment:
Q  392 tttttaacacatgcattcaatcaaatcatatcaaatagatatttttagagatattttacgaact 455  Q
    ||||| ||||||| || ||||||||| || ||||||| ||| |||||||||||||||| |||||    
T  40919013 ttttttacacatgtatccaatcaaattatgtcaaataaataattttagagatattttaggaact 40918950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 18293839 - 18293875
Alignment:
Q  401 catgcattcaatcaaatcatatcaaatagatattttt 437  Q
    ||||||||||||||||||||||||  |||||||||||    
T  18293839 catgcattcaatcaaatcatatcacgtagatattttt 18293875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 34646288 - 34646355
Alignment:
Q  134 aatttagggttaaatttttcattttctggtgtttcttagcattgtgtgaaatgtgaaaggcaattttc 201  Q
    ||||| || |||||||| ||||||  |||||||| ||||||||||||||| ||| |||| ||||||||    
T  34646288 aatttgggattaaatttgtcatttcatggtgtttattagcattgtgtgaagtgtaaaagacaattttc 34646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University