View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_high_13 (Length: 544)
Name: NF14236_high_13
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_13 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Complemental strand, 35994235 - 35993707
Alignment:
| Q |
17 |
gaacaactacacattgaattgagccacatacattggtgatggtgcttggacctggctcggctattgttagattcaaactgtcaccaaatgtttcagcata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35994235 |
gaacaactacacattgaattgagccacatacattggtgatggtgcttggacctggctcggctattgttagattcaaactgtcaccaaatgtttcagcata |
35994136 |
T |
|
| Q |
117 |
aggtttttctcccacaataactatggcgtaggaaaatttgtttgacttgataaaattagcatcaggattttcattgtagacaacttcagttgcaggatca |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35994135 |
aggtttttctcccacaataactatggcataggaaaatttgtttgacttgataaaattagcatcaggattttcattgtagacaacttcagttgcaggatca |
35994036 |
T |
|
| Q |
217 |
actgtttgttttataccatcaaggatggttgtacctgtcaggacaaataaattctatcagatagtttacaatttccgagaataggatgctatgaaaatnn |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35994035 |
actgtttgttttataccatcaaggatggttgtacctgtcaggacaaataaattctatcagatagtttacaatttccgagaataggatgctatgaaaataa |
35993936 |
T |
|
| Q |
317 |
nnnnncatatctcactgtatcaattttttcatgtcaccagttgcattttagacagttcaaaattgagattttaacatgtaaataaccacattctaattat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35993935 |
aaaaacatatctcactgtatcaattttttcatgtcaccagttgcgttttagacagttcaaaattgagattttaacatgtaaataaccacattctaattat |
35993836 |
T |
|
| Q |
417 |
tgtaaccaatgaaatgattggttttcaagaagggaaggaagaaatcatagaatcatc-ttggactaacagagactgaataatcagctattgactatgaag |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35993835 |
tgtaaccaatgaaatgattggttttcaagaagggaaggaagaaatcatagaatcatctttggactaacagagactgaataatcagctattgactatgaag |
35993736 |
T |
|
| Q |
516 |
caccgacacagactacggatatgacacta |
544 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
|
|
| T |
35993735 |
caccgacacagacaacggatatgacacta |
35993707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University