View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_18 (Length: 481)
Name: NF14236_high_18
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 44532531 - 44532974
Alignment:
| Q |
18 |
acgtgaaaggagtctagnnnnnnncttttcctattttaatttagtactatatatatactttatatgattacaaaattcaatcatgataatcaatatatta |
117 |
Q |
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| T |
44532531 |
acgtgaaaggagtctagtttttttcttttcctattttaatttaatactata----tactttatatgattacaaaattcaatcatcataatcaatatatta |
44532626 |
T |
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| Q |
118 |
attatcacctcctttctgtctcctccacttccttgatccctctatatatacatgtaggaaactagctgatcttggctatcacagaagctcaaagaagtgc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44532627 |
attatcacctcctttctgtctcctccacttccttgatccctctatatatacatgtaggaaactagctgatcttggttatcacagaagctcaaagaagtgc |
44532726 |
T |
|
| Q |
218 |
aaggagaaatttgaaaatgtatacaagtatcacaaaagaaccaaagaaggtagaagtgggaaatcagaaggaaaaacctatagattttttgatcaattac |
317 |
Q |
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| T |
44532727 |
aaggagaaatttgaaaatgtatacaagtatcacaaaagaaccaaagaaggtagaagtgggaaatcagaaggaaaaacctatagattttttgatcaattac |
44532826 |
T |
|
| Q |
318 |
aagcacttgaaaaacaactcacattctcctcttaccatccaaaaccacaaacaaataataacacaccaacaacaaatcccattgaaaccacacgagcaat |
417 |
Q |
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| T |
44532827 |
aagcacttgaaaaacaactcacattctcctcttaccatccaaaaccacaaacaaataataacacaccaacaacaaatcccattgaaaccacacaagcaat |
44532926 |
T |
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| Q |
418 |
atcatatgtcacaaccactgttccatccacaaaccctaccacattcat |
465 |
Q |
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| T |
44532927 |
atcatatgtcacaaccactgttccatccacaaaccctaccacattcat |
44532974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 173 - 327
Target Start/End: Complemental strand, 44554641 - 44554487
Alignment:
| Q |
173 |
aggaaactagctgatcttggctatcacagaagctcaaagaagtgcaaggagaaatttgaaaatgtatacaagtatcacaaaagaaccaaagaaggtagaa |
272 |
Q |
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| T |
44554641 |
aggaagctagcagaacttgggtaccacagaagttcaaagaaatgcaaagagaagtttgagaatgtttataagtatcacaagagaaccaaagatggtcgag |
44554542 |
T |
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| Q |
273 |
gtgggaaatcagaaggaaaaacctatagattttttgatcaattacaagcacttga |
327 |
Q |
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| T |
44554541 |
gtggaaaatcagatggtaagacttatcgattttttgatcaattagaagcccttga |
44554487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 330
Target Start/End: Original strand, 12682035 - 12682193
Alignment:
| Q |
172 |
taggaaactagctgatcttggctatcacagaagctcaaagaagtgcaaggagaaatttgaaaatgtatacaagtatcacaaaagaaccaaagaaggtaga |
271 |
Q |
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||||||| | || |||||||| ||||| |||| ||| || || ||||| || || ||||| ||||| ||||| |||||||| |||||||||||||| ||| |
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| T |
12682035 |
taggaaaatggcagatcttggatatcaaagaaactccaaaaaatgcaaagaaaagtttgagaatgtttacaaatatcacaagagaaccaaagaaggaaga |
12682134 |
T |
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| Q |
272 |
agtgggaaatcagaaggaaaaacctatagattttttgatcaattacaagcacttgaaaa |
330 |
Q |
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|||| |||||||| || ||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
12682135 |
ggtggtaaatcagatggtaaaacttatagattctttgatcaattacaagcccttgaaaa |
12682193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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