View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_20 (Length: 457)
Name: NF14236_high_20
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 167 - 350
Target Start/End: Original strand, 35540823 - 35541006
Alignment:
| Q |
167 |
ttaactgagaaatagtaaaagaaaatgcattagcagctacaactttacacaaaccaaaattaaatgttcattaatttaactcaatcgagtataaacagaa |
266 |
Q |
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| T |
35540823 |
ttaactgagaaatagtaaaagaaaatgcaatagcagctacaactttacacaaaccaaaattaaatgttcattaatttaactcaatcgagtataaacagaa |
35540922 |
T |
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| Q |
267 |
gatgatagtatttcacgacaaacaaaaggcagtgccctaatttctaaaattatatgaaccgttatctttgggactaattttcct |
350 |
Q |
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| T |
35540923 |
gatgatagtattacacgacaaacaaaaggcagtgccctaatttctaaaattatatgaaccgttatctttgggactaattttcct |
35541006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 35540700 - 35540821
Alignment:
| Q |
1 |
atagcaagtaaaagtttaaaatgacattatttttgttaattgtttggtaaagagaaaagaaagaaagttcgactactttttcatctaccaagttcaaatc |
100 |
Q |
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| T |
35540700 |
atagcgagtaaaagtttaaaatgacattatttttgttaattgtttggtaaagagaaaagaaagaaagtttgactacttttttatctaccaagttcaaatc |
35540799 |
T |
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| Q |
101 |
atatgattgattaaatacagac |
122 |
Q |
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| T |
35540800 |
atatgattgattaaatacagac |
35540821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 35541463 - 35541523
Alignment:
| Q |
346 |
ttcctcccacttctcgttgtccatgttaaaaatatactcttaaaa--agtatatttttagagga |
407 |
Q |
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| T |
35541463 |
ttcctcccacttctcgt---ccatgttaaagatatactctaaaaaagagtatatttttagagga |
35541523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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