View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_high_24 (Length: 432)
Name: NF14236_high_24
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_24 |
 | |
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| [»] scaffold0470 (2 HSPs) |
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| [»] scaffold0514 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 210 - 414
Target Start/End: Complemental strand, 6804910 - 6804706
Alignment:
| Q |
210 |
agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6804910 |
agttaggagatttgaacgaagatgattaaaatcctatgatgcagttgaattttaggtctctattttttgggttagaatgtgtagtttttaaattagttaa |
6804811 |
T |
|
| Q |
310 |
catctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaatattt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6804810 |
catctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgcaatgctttccatgaaatgatgaaagtaattcgacaattttaatattt |
6804711 |
T |
|
| Q |
410 |
tgaac |
414 |
Q |
| |
|
||||| |
|
|
| T |
6804710 |
tgaac |
6804706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 6805109 - 6804972
Alignment:
| Q |
11 |
cacagactatataaagtagcatcactatactatttatccactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6805109 |
cacagactatataaagtagcatcactatactatttatccactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatac |
6805010 |
T |
|
| Q |
111 |
actgttaagaggcagttaaaagtaagatttttcattat |
148 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||| |
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| T |
6805009 |
actgttgagaggcagttaaaagtaagatttttcattat |
6804972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 210 - 378
Target Start/End: Complemental strand, 6617927 - 6617757
Alignment:
| Q |
210 |
agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6617927 |
agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaa |
6617828 |
T |
|
| Q |
310 |
c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaa |
378 |
Q |
| |
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| |||||||| ||||||||| ||| ||||||||||| ||||||||| |||| | | ||||||||| |||| |
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| T |
6617827 |
catatctcaatagggataaaaatagattggcacatttctatatctttttagaggcactgctttccatgaaa |
6617757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 210 - 406
Target Start/End: Complemental strand, 6791929 - 6791739
Alignment:
| Q |
210 |
agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
6791929 |
agttaggagatttgaacgaagatgattaaaatcctacaatgcagttggattttagttctctattttttgagttagaatgtgtagtttttaaattatttaa |
6791830 |
T |
|
| Q |
310 |
c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata |
406 |
Q |
| |
|
| |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | |||||||| |||||||||||||||||||||||||| |
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| T |
6791829 |
catatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata |
6791739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 6650237 - 6650077
Alignment:
| Q |
240 |
atcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaac--atctcaatggggataaaagtagcttgg |
337 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||| |
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| T |
6650237 |
atcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattgg |
6650138 |
T |
|
| Q |
338 |
cacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata |
406 |
Q |
| |
|
||||||| |||||||||||||| | | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
6650137 |
cacatttttatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata |
6650077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 6730603 - 6730443
Alignment:
| Q |
240 |
atcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaac--atctcaatggggataaaagtagcttgg |
337 |
Q |
| |
|
||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||| |
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|
| T |
6730603 |
atcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattgg |
6730504 |
T |
|
| Q |
338 |
cacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata |
406 |
Q |
| |
|
||||||| |||||||||||||| | | |||||||| |||||||||||||||||||||||||| |
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|
| T |
6730503 |
cacatttttatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata |
6730443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 6792074 - 6791978
Alignment:
| Q |
49 |
cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
6792074 |
cactatagtagagttttagtttattaggtaaatatatgccaattgtgaagtttttgaaatacacggttgagaggcagttaaaggtaagatttttcat |
6791978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 6592380 - 6592283
Alignment:
| Q |
50 |
actatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcatta |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
6592380 |
actatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaagatttttcatta |
6592283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 6618086 - 6617988
Alignment:
| Q |
49 |
cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcatta |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |||||| |||||| |||||||||||||||| |
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|
| T |
6618086 |
cactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcggttaaaggtaagatttttcatta |
6617988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 412
Target Start/End: Complemental strand, 6592222 - 6592040
Alignment:
| Q |
210 |
agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
6592222 |
agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattt--------------ttgggttagaatgtgtaatttttaaattatttaa |
6592137 |
T |
|
| Q |
310 |
c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaatat |
407 |
Q |
| |
|
| |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | |||||||| || ||||||||||||||||||||||| |
|
|
| T |
6592136 |
catatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttcc--------ataaaagtaattcgacaattttaatag |
6592045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 6620476 - 6620386
Alignment:
| Q |
238 |
aaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaacatctcaat-ggggataaa |
327 |
Q |
| |
|
||||||||||| | ||||||||| || |||||||| ||| |||||| || | |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
6620476 |
aaatcctatgatccggttgaattttagttctctattctttttgttagagtggggagtttttaaacgatttaacatctcaataggggataaa |
6620386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 6592405 - 6592376
Alignment:
| Q |
14 |
agactatataaagtagcatcactatactat |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6592405 |
agactatataaagtagcatcactatactat |
6592376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 210 - 378
Target Start/End: Complemental strand, 7245 - 7075
Alignment:
| Q |
210 |
agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7245 |
agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaa |
7146 |
T |
|
| Q |
310 |
c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaa |
378 |
Q |
| |
|
| |||||||| ||||||||| ||| ||||||||||| ||||||||| |||| | | ||||||||| |||| |
|
|
| T |
7145 |
catatctcaatagggataaaaatagattggcacatttctatatctttttagaggcactgctttccatgaaa |
7075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 7404 - 7306
Alignment:
| Q |
49 |
cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcatta |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |||||| |||||| |||||||||||||||| |
|
|
| T |
7404 |
cactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggctgttaaaggtaagatttttcatta |
7306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 210 - 406
Target Start/End: Original strand, 4694 - 4884
Alignment:
| Q |
210 |
agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4694 |
agttaggagatttgaacgaagatgattaaaatcctacaatgcagttggattttagttctctattttttgagttagaatgtgtagtttttaaattatttaa |
4793 |
T |
|
| Q |
310 |
c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata |
406 |
Q |
| |
|
| |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4794 |
catatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata |
4884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 4549 - 4645
Alignment:
| Q |
49 |
cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcat |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
4549 |
cactatagtagagttttagtttattaggtaaatatatgccaattgtgaagtttttgaaatacacggttgagaggcagttaaaggtaagatttttcat |
4645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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