View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_26 (Length: 410)
Name: NF14236_high_26
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 43128586 - 43128861
Alignment:
| Q |
18 |
tttatgacacccatgttgtagaaaattaagttgaacatacacgtttatttttaaatatacaacgtaattttcatcttaactatatatgtacattgtttga |
117 |
Q |
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| T |
43128586 |
tttatgacacccatgttgtagaaaattaagttgaacacacacgtttatttttaaatatacaacgtaattttcatcttaactatatatgtacattgtttga |
43128685 |
T |
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| Q |
118 |
aacgtgttccgttgacatatagtttatgtcatacnnnnnnnnnaaaaatgtacagcataaacgtcaactttttaccacacatgtaccgtaaactacaaat |
217 |
Q |
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| T |
43128686 |
aacgtgttccgttgacatatagtttatgtc--actttttttttaaaaatgtacagcataaacgacaactttttaccacacatgtaccgtaaaccacaaat |
43128783 |
T |
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| Q |
218 |
tcacaatgctcatttatt-nnnnnnngttcaaaaatttctagttttctaccataaaaatgtagtttatggatttgtcaac |
296 |
Q |
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| T |
43128784 |
tcacaatgctcatttattaaaaaaaagttc--aaatttctagttttctaccataaaaatgtagtttatggatttgtcaac |
43128861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 410
Target Start/End: Original strand, 43128906 - 43128976
Alignment:
| Q |
340 |
gacggtaaataaaaggtatactaagaaggtgggaagcatatttatcggggaattcaagcctatagttattt |
410 |
Q |
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| T |
43128906 |
gacggtaaataaagggtatactaagaaggtgggaagcatatttaccgggtaattcaagcctatagttattt |
43128976 |
T |
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