View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_3 (Length: 1000)
Name: NF14236_high_3
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 405 - 984
Target Start/End: Complemental strand, 24914735 - 24914175
Alignment:
| Q |
405 |
gtcagataacaccgaatgatctcttactttgtcacataatctgttagttttatgtcttgaattgttattcttgatgcaaaaatatcacattaattataat |
504 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24914735 |
gtcagataacactgaatgatctctt----tgtcacataatctgttagttttatgtcttgaattgttattcttgatacaaaaatatcacattaattataat |
24914640 |
T |
|
| Q |
505 |
agattatctaattaaggctattggcatgtcacaaaatggtattgcatcaagtacaatggaatgatatatgttaacnnnnnnnatgacagaaccatatgtt |
604 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24914639 |
agattatctaattaagtctattggcatgtcacaaaatggtattgcatcaagtacaatggaatgatatatgttaactttttt--tgacagaaccatatgtt |
24914542 |
T |
|
| Q |
605 |
attgaatcaagtctattggcatgtcacaaaatgaccctgcatcaacttgcatgttgacatatatgcattttattttatatttttggacaacaagattatt |
704 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24914541 |
attgaatcaagtctattagcatgtcacaaaatgaccctgcatcaacttacatgttgacatatatgcattttattttatatttttggacaaaaagattatt |
24914442 |
T |
|
| Q |
705 |
atttcatttcacttcacttgcaataaaatcttgaataccatgggaaacataatcataatcatcgcaacgaggtaaaaatatgactgtctttggtaacgag |
804 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
24914441 |
atttcatttcacttcacttgcaataaaatcttgaataccatgggaaacataatcataatcattgcaacga-------------ctgtctttggtaacgag |
24914355 |
T |
|
| Q |
805 |
tgagaaaccatattgatctatcgccttacatgcttaactaagcagttcgagttagagctaatacagtgcttctaatattttaatatgaaggcaggctcag |
904 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914354 |
tgagaaaccatattgatctatcgccttacatgcttaactaagcagttcgaattagagctaatacagtgcttctaatattttaatatgaaggcaggctcag |
24914255 |
T |
|
| Q |
905 |
aagctaaactgccagtaccgtttatactatctgtaagactgtaactaccttagagtccacttcaaagagagtattattct |
984 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914254 |
aagctaaactgccagtaccgtttatactatctgtaagactgtaactaccttagagtccacttcaaagagagtattattct |
24914175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 24915148 - 24914791
Alignment:
| Q |
1 |
gagtctcttctcgtcctcctgccattggttctcaccattcttcagactttcctcagacagattctagaaagaatagacgtaagacatttggtgttgctgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24915148 |
gagtctcttctcgtcctcctgccattggttctcaccattcttcagactttcctcagacagattctagaaagaatagacgtaagacatttggtgttgcagg |
24915049 |
T |
|
| Q |
101 |
cgataagagacctcaatttgtctcagcataattagattcatttctcaaatttgttcattggttttacagaatctggatagtaaatagctaatacaataca |
200 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24915048 |
cgataagagacctcaatttgtctcggcataaatagattcatttctcaaatttgttcattggttttatagaatctggatagtaaatagctaatacaataca |
24914949 |
T |
|
| Q |
201 |
acacaa---------tgcagctcttttttgtatcatgttcattactttaaggtattagtttcatgagttttttccccctcttccattttgaaattctcaa |
291 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914948 |
acacaatgcatgcaatgcagctcttttttgtatcatgttcattactttaaggtattagtttcatgagttttttccccctcttccattttgaaattctcaa |
24914849 |
T |
|
| Q |
292 |
ggttttttattgttgagtgtggaaagtatgttttggtggactaaataaggtgagattg |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24914848 |
ggttttttattgttgagtgtggaaagtatgttttggtggactaaataaggtgagattg |
24914791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 405 - 694
Target Start/End: Complemental strand, 24892156 - 24891868
Alignment:
| Q |
405 |
gtcagataacaccgaatgatctcttactttgtcacataatctgttagttttatgtcttgaattgttattcttgatgcaaaaatatcacattaattataat |
504 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
24892156 |
gtcagataacactgaatgatctcttactttctcacatgatctgttagttttatgtcttgaattgttattcttgatacaaaaatatcacattaattctaat |
24892057 |
T |
|
| Q |
505 |
agattatctaattaaggctattggcatgtcacaaaatggtattgcatcaagtacaatggaatgatatatgttaac-nnnnnnnatgacagaaccatatgt |
603 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||| |||| |
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| T |
24892056 |
agattatctaattaactatattggcatgtcacaaaatggcattgcatcaagtacaatggaatgacatatgttaacttttatttatgatggaac--aatgt |
24891959 |
T |
|
| Q |
604 |
tattgaatcaagtctattggcatgtcacaaaatgaccctgcatcaacttgcatgttgacatatatgcattttattttatatttttggacaa |
694 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
24891958 |
tattaaatcaagtctattggcatgtcacaagatgaccctacatcaacttacatgttgaaatatatgcattttattttatattttgggacaa |
24891868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 24892308 - 24892212
Alignment:
| Q |
252 |
tcatgagttttttccccctcttccattttgaaattctcaaggttttttattgttgagtgtggaaagtatgttttggtggactaaataaggtgagattg |
349 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||| | ||||||||||| |
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| T |
24892308 |
tcatgagttttttcccc-tcttccattttgaaattctcaagatttttgattgttgagtgtgtaaagtatgttttggtgtactaactgaggtgagattg |
24892212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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