View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_35 (Length: 359)
Name: NF14236_high_35
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 4597189 - 4597431
Alignment:
| Q |
19 |
cctccaacatcaaaggattcctcagtgattgagtcaccgaaaagatatatttgtggcctcttagtcatgtttgatcatacaattgtatggttggacttgg |
118 |
Q |
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| T |
4597189 |
cctccaacatcaaaggattcctcagtgattgagtcaccaaaaagatatatttgtggcctcttagtcatgtttgatcatacaattgtatggttggacttgg |
4597288 |
T |
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| Q |
119 |
tgggttcagttcaagtgaaagaaatggaagagggtcttagatcatataactatgttgatgcattaataaagtaaataagattccactacaatgactacat |
218 |
Q |
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| T |
4597289 |
tgggttcagttcaggtgaaagaaatggaagagggtcttagatcatataactatgttgatgcattaataaagtaaataagattccactacaatgactacat |
4597388 |
T |
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| Q |
219 |
tctcaatctccagataaaaaattataaaatgtatttggagaaa |
261 |
Q |
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| T |
4597389 |
tctcaatcaccagataaaaaattataaaatgtatttggagaaa |
4597431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 4597503 - 4597595
Alignment:
| Q |
259 |
aaaaaatataagttttactgttccatctatcccatattaaaatgatccattggactattttacattgaggttacttattatgtaccctatgct |
351 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4597503 |
aaaaaatataagttttactgttccttctatcccatattaaaatgatccattggactattttacattgaggttacttattatgtactctatgct |
4597595 |
T |
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