View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_high_37 (Length: 342)
Name: NF14236_high_37
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 41714447 - 41714745
Alignment:
| Q |
18 |
atgaaagaaaaatatatattattcaatagttcatgcaaacaatgagggacaacatagtaaactaaaattattattttgtttgnnnnnnnaatctttattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
41714447 |
atgaaagaaaaatatatattattcaatagttcatgcaaacaatgagggacaacatagtaaactaaaattcttattttgtttgtttttt-aatctttattt |
41714545 |
T |
|
| Q |
118 |
cgttaaaccaagtttccaaagaatttgcatagagaatgtttataagtctggtagaagagaaatgtgaaccgtagccaaaaaattagcacaactatttctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714546 |
cgttaaaccaagtttccaaagaatttgcatagagaatgtttataagtctggtagaagagaaatgtgaaccgtagccaaaaaattagcacaactatttctt |
41714645 |
T |
|
| Q |
218 |
tcatggagtgtatggacaatggagttgagaagattcctaatatcctaaatcaaagtagcatctttgaggatttattcccggtgaacagaatcaatgttag |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714646 |
tcatggagtgtatggacattggagttgagaagattcctaatatcctaaatcaaagtagcatctttgaggatttattcccggtgaacagaatcaatgttag |
41714745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University