View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_high_40 (Length: 330)
Name: NF14236_high_40
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 77 - 317
Target Start/End: Original strand, 40362767 - 40363006
Alignment:
| Q |
77 |
ttcattaaatccataggatgagtggtgagaaaacttgtggaatccaaatttatgtcccattattaaaatgcacatctaacttataaccaaaatgaatgtt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
40362767 |
ttcattaaatccataggatgagtggtgagaaaacttgtggaatccaaatttatgtcccatta---aaatgcacatttaacttataaccaaaatgaatgtt |
40362863 |
T |
|
| Q |
177 |
ctcaattaaccactacct-----atcttacacgtcttgtgttgttgaaaacaaaagctcgaataaatcacgttgaatgcatgtcatttggaactgatggc |
271 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40362864 |
ctcaattaaccactacctaacctatcttacacgtcttgtgttgttgaaaacaaaagctcgaataaatcacgttgaatgcatgtcatttggaac---tggc |
40362960 |
T |
|
| Q |
272 |
ttgtgcagtttgctgtgcgtgagggtttgaacttgccttcaaattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40362961 |
ttgtgcagtttgctgtgcgtgagggtttgaacttgccttcaaattg |
40363006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 40362511 - 40362579
Alignment:
| Q |
16 |
aattacacatttaagtttggttcctcctaagtttaattcctaactccttcccagctatatattcattaaa |
85 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40362511 |
aattacacatttaagtt-ggttcctcctaagtttaattcctaactccttccctgctatatattcattaaa |
40362579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University