View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_41 (Length: 307)
Name: NF14236_high_41
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 39512702 - 39512419
Alignment:
| Q |
16 |
acatattctaattctagctaaacaaagctcaaaactcaaaagaacaaacnnnnnnnataaagaactttctccacaatcacttgtacttcaagcaacaaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39512702 |
acatattctaattctagctaaacaaagctcaaaactcaaaagaacaaactttttttataaagaactttctccacaatcacttgtacttcaagcaacaaaa |
39512603 |
T |
|
| Q |
116 |
gtcagattccaatcattccatgnnnnnnnnnctaacatttacttaataccattttggtccatttgatgacccattaaatatattcaagattaagaatgaa |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39512602 |
gtcagattccaatcattccatgaaacaaaaactaacatttacttaataccattttggtccatttgatgacccattaaatatattcaagattaagaatgaa |
39512503 |
T |
|
| Q |
216 |
aaagttagactttaagcacttaaatgaaatttaatgaccttggtaagagattaaaagaaaaactacatacatggtcaccctttg |
299 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39512502 |
aaggttagactttaagcacttaaatgaaatttaatgaccttggtaagagattaaaagaaaaactacatacatggtcaccctttg |
39512419 |
T |
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