View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_42 (Length: 304)
Name: NF14236_high_42
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 3745256 - 3745541
Alignment:
| Q |
1 |
agatgtggtgaattggagtatttaaacggtgagaatgaagnnnnnnnnctagaaggttcaggagaaatggaacggaaacacagtagggacatttgaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745256 |
agatgtggtgaattggagtatttaaacggtgagaatgaagaaaaaaa-ctagaaggttcaggagaaatggaacggaaacacagtagggacatttgaaagt |
3745354 |
T |
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| Q |
101 |
tctagtagtttcgagtttagaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttgtaccttctagagtcgtttgactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745355 |
tctagtagtttcgagtttagaagaacacgtggttctcttaacattccttatttagagttctttctatttctttcttgtaccttctagagtcgtttgactt |
3745454 |
T |
|
| Q |
201 |
ttggtcaatcctctctggctctctcgcactcccacatgta-tttatttattttagatagaaaaaatcatcataatcatggacacact |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3745455 |
ttggtcaatcctctctggctctctcgcactcccacatgtatttttttttttttagatagaaaaaatcatcataatcatggacacact |
3745541 |
T |
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