View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_44 (Length: 286)
Name: NF14236_high_44
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 19395506 - 19395234
Alignment:
| Q |
1 |
ttccagtctcattttcttttttgaaaagtgaatcacannnnnnnatattataaagtaatggtgggacttcttttaggatagtagtcaaaagaaaagcttt |
100 |
Q |
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| T |
19395506 |
ttccagtctcattttcttttttgaaaagtgaatcacatttttttatattataaagtaatggtgggacttctttaaggatagtagtcaaaagaaaagcttt |
19395407 |
T |
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| Q |
101 |
tgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattgaacttgaataagataaaataattcaagtggaattagaagttacttac |
200 |
Q |
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| T |
19395406 |
tgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattgaacttgaataagataaaataattcaagtggaattagaagttacttac |
19395307 |
T |
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| Q |
201 |
aaccaaatgtaaccaactgattgtgaagagtagctataaaaacaataacttgatgctagtattagagaataat |
273 |
Q |
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| T |
19395306 |
aaccaaatgtaaccaactgattgtgaagagtagctataaaaacaataacttgatgctagtattagagaataat |
19395234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 18871672 - 18871776
Alignment:
| Q |
46 |
tattataaagtaatggtgggacttcttttaggatagtagtcaaaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgtgtt |
145 |
Q |
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| T |
18871672 |
tattataaagtaattgtgagacttattg-aggatagtagtcaaaagaaaagcttttgtttcaagata--gattctgatttatcatgccttcaattgtgtt |
18871768 |
T |
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| Q |
146 |
cagtattg |
153 |
Q |
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| T |
18871769 |
ctgtattg |
18871776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 19383129 - 19383077
Alignment:
| Q |
88 |
aaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgt |
142 |
Q |
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| T |
19383129 |
aaagaaaagcttttgtttcaagata--gattctgatttatcatgacttcaattgt |
19383077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 18106020 - 18105979
Alignment:
| Q |
112 |
atagattctgatttatcatgccttcaattgtgttcagtattg |
153 |
Q |
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| T |
18106020 |
atagattatgatttatcatgccttcaattgtgttctgtattg |
18105979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 19383038 - 19383005
Alignment:
| Q |
152 |
tgaacttgaataagataaaataattcaagtggaa |
185 |
Q |
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| T |
19383038 |
tgaacttgaataagataaaataattcaagtggaa |
19383005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 19428088 - 19428052
Alignment:
| Q |
151 |
ttgaacttgaataagataaaataattcaagtggaatt |
187 |
Q |
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| T |
19428088 |
ttgaacttgaataatataaaataattcaagtggaatt |
19428052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 19337637 - 19337601
Alignment:
| Q |
151 |
ttgaacttgaataagataaaataattcaagtggaatt |
187 |
Q |
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| T |
19337637 |
ttgaacttgactaagataaaacaattcaagtggaatt |
19337601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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