View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_50 (Length: 278)
Name: NF14236_high_50
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 39613575 - 39613493
Alignment:
| Q |
177 |
ctagtaactggttcttcgacgaagaagacatggatttcgtttcagacttcaaagatctccccataaaattccaacaaacatta |
259 |
Q |
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| T |
39613575 |
ctagtaactggttcttcgacgaagaagacatggatttcgtttcagacttcaaagatctccccataaaattccaacaaacatta |
39613493 |
T |
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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 39613736 - 39613671
Alignment:
| Q |
16 |
atcaagtaccaataaatccaaatccatttcattggatcttgtgaagaaaataagtggtgctatagc |
81 |
Q |
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| T |
39613736 |
atcaagtaccaataaatccaaatccatttcattggatcttgtgaagcaaataagtggtgctatagc |
39613671 |
T |
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