View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_high_52 (Length: 270)

Name: NF14236_high_52
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_high_52
NF14236_high_52
[»] chr4 (9 HSPs)
chr4 (16-210)||(38791723-38791918)
chr4 (24-124)||(22184542-22184643)
chr4 (24-117)||(26632975-26633069)
chr4 (27-124)||(52813643-52813741)
chr4 (24-124)||(11055226-11055327)
chr4 (24-78)||(13761838-13761892)
chr4 (24-78)||(27891426-27891479)
chr4 (24-78)||(48151173-48151227)
chr4 (21-74)||(19455209-19455262)
[»] chr7 (9 HSPs)
chr7 (24-124)||(22075107-22075208)
chr7 (24-125)||(10618965-10619067)
chr7 (24-124)||(44421901-44422002)
chr7 (24-127)||(33124739-33124843)
chr7 (24-124)||(33935552-33935653)
chr7 (25-124)||(222226-222326)
chr7 (21-124)||(46573612-46573716)
chr7 (21-78)||(17025408-17025465)
chr7 (21-124)||(36472480-36472584)
[»] chr5 (3 HSPs)
chr5 (24-124)||(1840687-1840788)
chr5 (24-78)||(19282161-19282215)
chr5 (27-79)||(39414224-39414276)
[»] chr1 (3 HSPs)
chr1 (25-125)||(44596557-44596658)
chr1 (24-125)||(12224574-12224676)
chr1 (38-124)||(20903949-20904036)
[»] chr3 (6 HSPs)
chr3 (24-125)||(9505120-9505222)
chr3 (24-125)||(25253741-25253843)
chr3 (24-119)||(28242622-28242718)
chr3 (24-124)||(52199468-52199569)
chr3 (24-118)||(52934851-52934946)
chr3 (24-124)||(38643546-38643647)
[»] chr8 (4 HSPs)
chr8 (21-124)||(9412524-9412628)
chr8 (24-126)||(3307973-3308076)
chr8 (25-114)||(32740679-32740769)
chr8 (24-76)||(9135991-9136043)
[»] chr2 (4 HSPs)
chr2 (24-118)||(44740489-44740584)
chr2 (24-124)||(3409188-3409289)
chr2 (22-79)||(9963796-9963853)
chr2 (24-115)||(24844675-24844767)
[»] chr6 (3 HSPs)
chr6 (21-117)||(4441308-4441405)
chr6 (38-124)||(11460014-11460101)
chr6 (24-74)||(1501887-1501937)
[»] scaffold0025 (1 HSPs)
scaffold0025 (22-115)||(11427-11521)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 38791723 - 38791918
Alignment:
Q  16 atatacaactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattgattccaatttattatggagttggttcggttcattg 115  Q
    ||||||| ||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||  |||| | |||||||||||||||||||    
T  38791723 atatacagctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgattccaaactattgtcgagttggttcggttcattg 38791822  T
Q  116 ccaaccctacattgaacttaatagaatggttcaactcatcatgctccattcaaaaacatagtctaatcaaactattcatcaacag-tagtgcttag 210  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  38791823 ccagccctacattgaacttaatagaatggttcaactcatcatgctccattcaaaaacatagtctaatcaaactattcatcaagagttagtgcttag 38791918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 22184542 - 22184643
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    |||||||||||||  |||||||| || || ||||||||||||||||||||||||| || | ||||  |||| | |||||||||||||||||||||| |||    
T  22184542 ctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgccagccc 22184641  T
Q  123 ta 124  Q
    ||    
T  22184642 ta 22184643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 26632975 - 26633069
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgcc 117  Q
    ||||||||||||| ||||||||  ||  | ||||||||||||||||||||||||| || || | |  |||||| |||||||||||||||||||||    
T  26632975 ctcaagttcagctcatttggttaatgagccaagttcaacgagttaattgtcgaatcgagttacgaactattatcgagttggttcggttcattgcc 26633069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 52813643 - 52813741
Alignment:
Q  27 aagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaacccta 124  Q
    ||||||||||  |||||||| || || ||||||||||||||||||||| ||| || | ||||  |||| | ||||||||||||||||||| ||||||||    
T  52813643 aagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcaaatagagtcccaaactattgtcgagttggttcggttcattgtcaacccta 52813741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 11055327 - 11055226
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||||| ||||||||| || || |||||||| ||||||||| |||||| || |||| |  |||| | ||||||||||||||||||| || |||    
T  11055327 ctcaagttcagctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggttcggttcattgtcagccc 11055228  T
Q  123 ta 124  Q
    ||    
T  11055227 ta 11055226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 13761838 - 13761892
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaat 78  Q
    ||||| ||||||| ||||||||| || || |||| ||||||||||||||||||||    
T  13761838 ctcaaattcagctcatttggttcatgaaccaagtccaacgagttaattgtcgaat 13761892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 27891426 - 27891479
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaat 78  Q
    ||||||||||||| ||||| ||| || || |||||||||||||||||||||||||    
T  27891426 ctcaagttcagctcatttg-ttcatgaaccaagttcaacgagttaattgtcgaat 27891479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 48151227 - 48151173
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaat 78  Q
    ||||||||||||| |||||||| ||| || ||||||||| || ||||||||||||    
T  48151227 ctcaagttcagctcatttggtttgtgaaccaagttcaacaagataattgtcgaat 48151173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 19455262 - 19455209
Alignment:
Q  21 caactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtc 74  Q
    |||||||||||||||| ||||| ||| || || ||||||||||| |||||||||    
T  19455262 caactcaagttcagctcatttgattcatgaaccaagttcaacgaattaattgtc 19455209  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 22075107 - 22075208
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||||| |||||||||||| || | ||||||||||||||||||||||| || ||| ||  |||||| |||||||||||||||||||||| |||    
T  22075107 ctcaagttcagctcatttggttcgtgaaccacgttcaacgagttaattgtcgaatcgagttctaaactattatcgagttggttcggttcattgccagccc 22075206  T
Q  123 ta 124  Q
    ||    
T  22075207 ta 22075208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 10618965 - 10619067
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||||| |||| |||| || || ||||||||||||||||||||||||| || ||||||  |||| | |||||| |||||||||| ||||| ||    
T  10618965 ctcaagttcagctcatttagttcatgaaccaagttcaacgagttaattgtcgaatcgagttccaaactattgtcgagttgattcggttcatagccaatcc 10619064  T
Q  123 tac 125  Q
    |||    
T  10619065 tac 10619067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 44422002 - 44421901
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    |||||||||||||  |||||||| || || ||||||||||||||||||||||||| || | ||||  |||| | ||||||||||||||||||| || |||    
T  44422002 ctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgacagccc 44421903  T
Q  123 ta 124  Q
    ||    
T  44421902 ta 44421901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 33124739 - 33124843
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||  | ||||||||| |  || ||||||||||||||||||||||||| || || |||  |||| | |||||||||||||||||||||| |||    
T  33124739 ctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaactattgtcgagttggttcggttcattgccagccc 33124838  T
Q  123 tacat 127  Q
    |||||    
T  33124839 tacat 33124843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 33935552 - 33935653
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    |||||||||||||  |||||||| || || |||||||||||||||||| |||||| || | ||||  |||| | ||||||||||| |||||||||| |||    
T  33935552 ctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattatcgaatcgagtcccaaactattgtcgagttggttcgattcattgccagccc 33935651  T
Q  123 ta 124  Q
    ||    
T  33935652 ta 33935653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 222326 - 222226
Alignment:
Q  25 tcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccct 123  Q
    ||||||||||||  |||||||| || || || ||||||||||||||||||||||  | | ||||  |||| | |||||||||||||||||||||| ||||    
T  222326 tcaagttcagctcgtttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcccaaactattgtcgagttggttcggttcattgccagccct 222227  T
Q  124 a 124  Q
    |    
T  222226 a 222226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 46573716 - 46573612
Alignment:
Q  21 caactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattgattc-caatttattatggagttggttcggttcattgccaa 119  Q
    ||||| ||||||  || ||||||||| || || ||||||||||||| |||| |||||| || || | | ||||| | ||||||||||||||||||||||     
T  46573716 caacttaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaattatttttgagttggttcggttcattgccag 46573617  T
Q  120 cccta 124  Q
    |||||    
T  46573616 cccta 46573612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 17025465 - 17025408
Alignment:
Q  21 caactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaat 78  Q
    ||||||||||||  || |||||||||||| || ||||||||||||| |||| ||||||    
T  17025465 caactcaagttcgactcatttggttcgtgaaccaagttcaacgagtcaattatcgaat 17025408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 36472480 - 36472584
Alignment:
Q  21 caactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaa 119  Q
    |||||||||||| ||| ||||||||| || || ||||||||||| | | || |||||| || |  ||| ||||| | ||||||||||||||||||| ||     
T  36472480 caactcaagttcggctcatttggttcatgaaccaagttcaacgaatcatttatcgaatcgagtatcaagttattttcgagttggttcggttcattgtcag 36472579  T
Q  120 cccta 124  Q
    |||||    
T  36472580 cccta 36472584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 1840788 - 1840687
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||||| ||||||||| || || |||||||||||||||||||||||||||| |||  |  |||| | ||||||||||||||||||||||||||    
T  1840788 ctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaattgagttctgaactattgtcgagttggttcggttcattgccaaccc 1840689  T
Q  123 ta 124  Q
    ||    
T  1840688 ta 1840687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 19282215 - 19282161
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaat 78  Q
    ||||||||||||| ||||||||| || || |||||||||||||||||||||||||    
T  19282215 ctcaagttcagctcatttggttcatgaaccaagttcaacgagttaattgtcgaat 19282161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 39414224 - 39414276
Alignment:
Q  27 aagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaatt 79  Q
    |||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||    
T  39414224 aagttcagctcattaggttcatggaccaagttcaacgagttaattgtcgaatt 39414276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 44596557 - 44596658
Alignment:
Q  25 tcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccct 123  Q
    |||||||||||| ||||||||| || || || |||||||||||||||||||||| || ||||||  |||| | |||||||||||||||||||||| ||||    
T  44596557 tcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactattgtcgagttggttcggttcattgccagccct 44596656  T
Q  124 ac 125  Q
    ||    
T  44596657 ac 44596658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 12224676 - 12224574
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattg-attccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||| ||| ||||||||| || || ||||||||||||||||||||||||| | ||||| |  |||| | ||||||||||||||||||| || |||    
T  12224676 ctcaagttcggctcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttcattgtcagccc 12224577  T
Q  123 tac 125  Q
    |||    
T  12224576 tac 12224574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 20904036 - 20903949
Alignment:
Q  38 atttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaacccta 124  Q
    ||||||||| || || |||||||||||||||||||| ||||||| ||||||  |||| | |||||| ||||||||||| ||| |||||    
T  20904036 atttggttcatgaaccaagttcaacgagttaattgttgaattgagttccaaactattgtcgagttgattcggttcatttccagcccta 20903949  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 9505222 - 9505120
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    |||||||||| || ||||||||| || || ||||||||||||||||||||||||| || |||| |  |||| | |||||||||||||||||||||| |||    
T  9505222 ctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcattgccagccc 9505123  T
Q  123 tac 125  Q
    |||    
T  9505122 tac 9505120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 25253741 - 25253843
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||||| ||||||||| || || ||||||||| |||| |||||||| | || ||||||  |||  | |||||||||||||||||||||| |||    
T  25253741 ctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcattgccagccc 25253840  T
Q  123 tac 125  Q
    |||    
T  25253841 tac 25253843  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 28242622 - 28242718
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaa 119  Q
    ||||| ||||||| ||||||||| || || || ||||||||||||||||||||||  | |||| | ||||| | |||||| ||||||||||||||||    
T  28242622 ctcaaattcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcaagttccgaattattgtcgagttgattcggttcattgccaa 28242718  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 52199468 - 52199569
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    |||||||||||||  |||||||| || || ||||||||||| ||||||||||||| || | ||||  |||| | ||||||||||| ||||||| || |||    
T  52199468 ctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtcccaaactattgtcgagttggttcgattcattgtcagccc 52199567  T
Q  123 ta 124  Q
    ||    
T  52199568 ta 52199569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 52934851 - 52934946
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgcca 118  Q
    ||||||||||||| ||||||||| || || |||||||| ||||||||| |||||| || |||| |  |||| |  ||||||||| |||||||||||    
T  52934851 ctcaagttcagctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcaagttggttcagttcattgcca 52934946  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 38643647 - 38643546
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    |||||||||||||  |||||||| || || || |||||| | |||||||||||||| | | ||||  |||| | ||||| |||||||| |||||||||||    
T  38643647 ctcaagttcagctcttttggttcatgaaccaaattcaacaaattaattgtcgaattaagtcccaaactattgtcgagttagttcggtttattgccaaccc 38643548  T
Q  123 ta 124  Q
    ||    
T  38643547 ta 38643546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 9412628 - 9412524
Alignment:
Q  21 caactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaa 119  Q
    |||||||||||||||| ||||||||| || || |||||||||||||| |||||||| | ||  |||||  ||| || ||||||||||||||||||||||     
T  9412628 caactcaagttcagctcatttggttcatgaaccaagttcaacgagttcattgtcgagtcgagctccaaactataatcgagttggttcggttcattgccag 9412529  T
Q  120 cccta 124  Q
    |||||    
T  9412528 cccta 9412524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 3307973 - 3308076
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||| ||| ||||||||| || || |||||| |||||||||||||||||| || |||| |  |||| | |||||||||||||||||||||| |||    
T  3307973 ctcaagttcggctcatttggttcatgaactaagttctacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcattgccagccc 3308072  T
Q  123 taca 126  Q
    ||||    
T  3308073 taca 3308076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 32740679 - 32740769
Alignment:
Q  25 tcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcatt 114  Q
    |||||||||| | ||||||||| || || || ||||| ||||||||||||||||||| ||||||  |||| | ||||||||||||||||||    
T  32740679 tcaagttcagttcatttggttcatgaaccaaattcaatgagttaattgtcgaattgagttccaaactattgtcgagttggttcggttcatt 32740769  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 9135991 - 9136043
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcga 76  Q
    ||||||||||||| ||||| ||| |  || |||||||||||||||||||||||    
T  9135991 ctcaagttcagcttatttgattcataaaccaagttcaacgagttaattgtcga 9136043  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 44740584 - 44740489
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgcca 118  Q
    |||||||||||||  |||||||| || || ||||||||||||||||||||||||| || | ||||  |||| | ||||||||||||||||||||||    
T  44740584 ctcaagttcagctcgtttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgcca 44740489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 3409289 - 3409188
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaaccc 122  Q
    ||||||||||| | ||||||||| || || ||||||||||||||||||||||||| || || | |  |||| | |||||||||||||||||||||| |||    
T  3409289 ctcaagttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgccagccc 3409190  T
Q  123 ta 124  Q
    ||    
T  3409189 ta 3409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 9963796 - 9963853
Alignment:
Q  22 aactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaatt 79  Q
    |||| |||||||||| ||||||||| || ||  |||||||||||||||||||||||||    
T  9963796 aacttaagttcagctcatttggttcatgaacccagttcaacgagttaattgtcgaatt 9963853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 24844767 - 24844675
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattg 115  Q
    ||||||||||||| ||||||||| || || |||||||||||| |||||| ||||| || || | |  |||||| |||||||||||| ||||||    
T  24844767 ctcaagttcagctcatttggttcatgaaccaagttcaacgagataattgccgaatcgagtttcgaactattatcgagttggttcggatcattg 24844675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 4441405 - 4441308
Alignment:
Q  21 caactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgcc 117  Q
    |||||||||||||||| |||| ||||||| || |||||||||||| |||||||||||| || || | |  |||| | |||||||||||||||||||||    
T  4441405 caactcaagttcagctcatttagttcgtgaaccaagttcaacgagctaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgcc 4441308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 11460101 - 11460014
Alignment:
Q  38 atttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattgccaacccta 124  Q
    ||||||||| || || ||||||||||| | |||| |||||| || |||| |  |||||| ||||||| ||||||||||||||||||||    
T  11460101 atttggttcatgaaccaagttcaacgaatcaattatcgaatcgagttccgaactattattgagttggatcggttcattgccaacccta 11460014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 1501887 - 1501937
Alignment:
Q  24 ctcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtc 74  Q
    ||||||||| | | ||||||||| || ||||||||||||||||||||||||    
T  1501887 ctcaagttcggttcatttggttcatgaacgaagttcaacgagttaattgtc 1501937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 11427 - 11521
Alignment:
Q  22 aactcaagttcagctaatttggttcgtggacgaagttcaacgagttaattgtcgaattga-ttccaatttattatggagttggttcggttcattg 115  Q
    |||| ||||||| || ||||||||| || || |||||| ||||| |||||||||||| || ||||||  |||||| |||||||||||||||||||    
T  11427 aacttaagttcacctcatttggttcatgaactaagttcgacgaggtaattgtcgaatcgagttccaaactattatcgagttggttcggttcattg 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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