View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_high_53 (Length: 267)

Name: NF14236_high_53
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_high_53
NF14236_high_53
[»] chr2 (11 HSPs)
chr2 (1-253)||(29490406-29490658)
chr2 (2-220)||(29488310-29488528)
chr2 (1-232)||(29502507-29502738)
chr2 (2-220)||(30256544-30256761)
chr2 (44-213)||(29507201-29507370)
chr2 (44-213)||(29518139-29518308)
chr2 (44-214)||(29549035-29549205)
chr2 (44-213)||(29511021-29511190)
chr2 (44-213)||(29541435-29541604)
chr2 (34-213)||(29535275-29535454)
chr2 (16-164)||(29505430-29505578)
[»] chr4 (1 HSPs)
chr4 (34-212)||(51266291-51266469)
[»] chr8 (1 HSPs)
chr8 (34-196)||(18874593-18874755)
[»] chr1 (2 HSPs)
chr1 (163-197)||(49721472-49721506)
chr1 (49-181)||(49721337-49721473)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 29490406 - 29490658
Alignment:
Q  1 aatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490406 aatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagcta 29490505  T
Q  101 ttattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490506 ttattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatat 29490605  T
Q  201 tgataaaaaggtaacttctttgatttgttttcttctttattttcatctttaat 253  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29490606 tgataaaaaggtaacttctttgatttgttttcttttttattttcatctttaat 29490658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 29488310 - 29488528
Alignment:
Q  2 atcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctat 101  Q
    |||| ||| |||| |||||| |||||||||| ||||| |||||||| || || |||||||||||||| |||||||||||| |  |||||||||| || ||    
T  29488310 atctcagaaataagagtcctttacttcttcaaatgaacccaattcacaacaagattccagttcttatccataatggaaaatccatttgtgaatctgcaat 29488409  T
Q  102 tattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatatt 201  Q
    |||||| || || |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29488410 tattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatagt 29488509  T
Q  202 gataaaaaggtaacttctt 220  Q
    || ||||||||||||||||    
T  29488510 gacaaaaaggtaacttctt 29488528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29502507 - 29502738
Alignment:
Q  1 aatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagcta 100  Q
    ||||| ||| |||| |||||| |||||||| | ||||| |||||||| ||||| |||||||||||||| |||||||||||| |  |||||||||| || |    
T  29502507 aatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaa 29502606  T
Q  101 ttattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatat 200  Q
    | ||||| ||||| |||||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  29502607 tcattgtgcagtacatagatgaagtttggaatgataaagcttcattcatgccctctgatccgtatgagagagctcaagctagattttggtttgattatat 29502706  T
Q  201 tgataaaaaggtaacttctttgatttgttttc 232  Q
     || |||||||| || | ||| ||||||||||    
T  29502707 agacaaaaaggtgacattttttatttgttttc 29502738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 30256761 - 30256544
Alignment:
Q  2 atcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctat 101  Q
    |||||||| |||| |||||| |||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |  |||||||||| || ||    
T  30256761 atcttagaaataagagtcctttacttcttca-atgaatccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaat 30256663  T
Q  102 tattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatatt 201  Q
    |||||| || || |||||||| |||||||||||||||||| |||||||| ||||| | |||||||||| |||||||||||||||||||||||| |||| |    
T  30256662 tattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgtcttctcacccttatgagaaagctcaagctagattttgggttgagtatagt 30256563  T
Q  202 gataaaaaggtaacttctt 220  Q
    || |||||||||| |||||    
T  30256562 gacaaaaaggtaatttctt 30256544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 29507370 - 29507201
Alignment:
Q  44 ttcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctcc 143  Q
    |||| |||||||| || ||||| ||||||||||| ||||| |||||||||||    |||  ||| || ||||| ||||||||||||||||||||| ||||    
T  29507370 ttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaatgataaatctcc 29507271  T
Q  144 attcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggta 213  Q
     ||| ||||||||||||| ||| ||| ||| ||||||||||| |||| ||||||||||||||| ||||||    
T  29507270 tttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatattgataagaaggta 29507201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 29518308 - 29518139
Alignment:
Q  44 ttcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctcc 143  Q
    ||||||||||||| || ||||||||||||||||| ||| |  ||||||||||    |||  ||| |||||||| ||||||||||||||||| ||| ||||    
T  29518308 ttcataagaaaatccctgttcttattcataatggtaaatcaatttgtgaatctttaattgctgttcagtatattgatgaggtttggaatgagaaatctcc 29518209  T
Q  144 attcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggta 213  Q
     ||  ||||||||||||||||| ||||| | ||||||||||| |||| ||||||| ||||||| ||||||    
T  29518208 tttgttgccttctgatccttatcagagatcacaagctagattctgggctgattatgttgataagaaggta 29518139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 214
Target Start/End: Complemental strand, 29549205 - 29549035
Alignment:
Q  44 ttcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctcc 143  Q
    |||| |||||||| || |||||||||||||||||||||||  ||||||||||    |||  ||| || ||||| ||||| ||||||||||| ||| ||||    
T  29549205 ttcagaagaaaatccctgttcttattcataatggaaaacccatttgtgaatctttaattgctgttcaatatattgatgaagtttggaatgagaaatctcc 29549106  T
Q  144 attcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggtaa 214  Q
     ||  ||||||||||||||||| ||||| | ||||||  |||||||| ||||||||||||||| |||||||    
T  29549105 tttgttgccttctgatccttatcagagatcacaagctttattttgggctgattatattgataagaaggtaa 29549035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 29511190 - 29511021
Alignment:
Q  44 ttcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctcc 143  Q
    ||||||||||||| |||||||||||||||||||| ||| |  ||||||||||    |||  ||| || ||||| ||||| ||||||||||| ||| ||||    
T  29511190 ttcataagaaaatcccagttcttattcataatggtaaatcaatttgtgaatctttaattgctgttcaatatattgatgaagtttggaatgagaaatctcc 29511091  T
Q  144 attcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggta 213  Q
     ||  ||||||||||||||||| ||||| | ||||||||||| |||| ||||||| ||||||| ||||||    
T  29511090 tttgttgccttctgatccttatcagagatcacaagctagattctgggctgattatgttgataagaaggta 29511021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 29541604 - 29541435
Alignment:
Q  44 ttcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatgataaagctcc 143  Q
    |||| |||||||| || ||||| || || ||||| |||||| ||||||| |||  | | |||||  ||||||| |||||||||||||| |||| | ||||    
T  29541604 ttcacaagaaaatcccggttctaatccacaatggcaaacctatttgtgagtcacttgtaattgttgagtatattgatgaggtttggaaggatagatctcc 29541505  T
Q  144 attcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggta 213  Q
     ||  ||||||||||||| ||  ||||||| |||||||||||||||| ||| ||| ||||||| ||||||    
T  29541504 tttgttgccttctgatccctaccagagagcacaagctagattttgggctgactatgttgataagaaggta 29541435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 29535454 - 29535275
Alignment:
Q  34 atgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatg 133  Q
    ||||| || ||||| |||||||| || ||||| ||||||||||| ||| |  ||||||||||    ||   ||| |||||||| ||||||||||||||||    
T  29535454 atgaaccctattcacaagaaaatccctgttctaattcataatggtaaatcaatttgtgaatctttaatggctgttcagtatattgatgaggtttggaatg 29535355  T
Q  134 ataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggta 213  Q
    | ||| || | ||  ||||||||||||||||| ||||| | |||||||| || |||| ||||||| ||||||| ||||||    
T  29535354 agaaatcttctttgttgccttctgatccttatcagagatcacaagctaggttctgggctgattatgttgataagaaggta 29535275  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 29505578 - 29505430
Alignment:
Q  16 agtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtata 115  Q
    |||||| |||| || || |||||||||||||| ||||||||||||||||| || |||||||| ||| |  ||||||| |||   | ||||||  | ||||    
T  29505578 agtcctttactcctacaaatgaatccaattcacaagaaaattccagttctaatccataatggcaaatccatttgtgagtcactaaatattgttgaatata 29505479  T
Q  116 tagatgaggtttggaatgataaagctccattcatgccttctgatcctta 164  Q
    | |||||||||||||||||| |  |||| ||  ||||||||||||||||    
T  29505478 ttgatgaggtttggaatgatcattctccttttttgccttctgatcctta 29505430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 51266469 - 51266291
Alignment:
Q  34 atgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatg 133  Q
    ||||||||| |||| || ||| ||||||| |||||||||||||| || ||  ||||||||||    ||||||||  | || || |||||||| ||||| |    
T  51266469 atgaatccagttcacaaaaaagttccagtccttattcataatgggaagcccatttgtgaatccttgattattgttgaatacattgatgaggtctggaaag 51266370  T
Q  134 ataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgattatattgataaaaaggt 212  Q
    || || |||||||  ||||  | |||||  || |||||||||||||||||||||||| ||||| | ||||||| |||||    
T  51266369 atcaaactccattgctgcccaccgatccacatcagagagctcaagctagattttgggctgattttgttgataataaggt 51266291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 18874755 - 18874593
Alignment:
Q  34 atgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatagatgaggtttggaatg 133  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||| ||||||||  ||| ||| ||    ||||||||  | ||||| |||||||||||||| |    
T  18874755 atgaacccaattcacaagaagattcctgttcttatccataagggaaaaccaatttctgagtccatcattattgttgaatatattgatgaggtttggaagg 18874656  T
Q  134 ataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggttgatt 196  Q
    |||| |  |||||  | || || ||||||||| ||| ||||||||| |||||||||| |||||    
T  18874655 ataaggtcccatttctaccctcagatccttatcagaaagctcaagcaagattttgggctgatt 18874593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 49721472 - 49721506
Alignment:
Q  163 tatgagagagctcaagctagattttgggttgatta 197  Q
    |||||||||||||||||||||||||||||||||||    
T  49721472 tatgagagagctcaagctagattttgggttgatta 49721506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 181
Target Start/End: Original strand, 49721337 - 49721473
Alignment:
Q  49 aagaaaattccagttcttattcataatggaaaacctgtttgtgaatcagctattattgtccagtatatag----atgaggtttggaatgataaagctcca 144  Q
    ||||| || |||||||| ||  ||||||| |||||  |||||||||| || ||||||||  ||||||| |    ||||||| |||||  ||||| |||||    
T  49721337 aagaagatcccagttctcatcaataatggcaaacccatttgtgaatctgcaattattgtgtagtatatggttggatgaggtctggaacaataaatctcca 49721436  T
Q  145 ttcatgccttctgatccttatgagagagctcaagcta 181  Q
     ||||||| | | | ||||||||||||||||||||||    
T  49721437 atcatgccctatcacccttatgagagagctcaagcta 49721473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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