View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_high_55 (Length: 264)

Name: NF14236_high_55
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_high_55
NF14236_high_55
[»] chr1 (2 HSPs)
chr1 (135-190)||(11031554-11031609)
chr1 (206-240)||(11032149-11032183)
[»] chr5 (2 HSPs)
chr5 (138-239)||(6804694-6804796)
chr5 (141-191)||(7495132-7495182)
[»] chr3 (2 HSPs)
chr3 (206-240)||(55193672-55193706)
chr3 (141-191)||(37373741-37373791)
[»] chr2 (2 HSPs)
chr2 (141-191)||(26487720-26487770)
chr2 (138-239)||(41768604-41768706)


Alignment Details
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 11031609 - 11031554
Alignment:
Q  135 tgttgatagagaaggagagagaagtttcaatgaggtggtggaagcaaggaagaaga 190  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||||||| |||||    
T  11031609 tgttgatagaggaggatagagaaggtccaatgaggtggtggaagcaaggaggaaga 11031554  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 11032149 - 11032183
Alignment:
Q  206 ggtggttagatatggtgttgagagtccatgataag 240  Q
    |||||||||||||||||||||||||||||||||||    
T  11032149 ggtggttagatatggtgttgagagtccatgataag 11032183  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 6804694 - 6804796
Alignment:
Q  138 tgatagagaaggagagagaagtttcaatgaggtggtggaagcaaggaagaagatcgattgtagagggtggt-ggttagatatggtgttgagagtccatga 236  Q
    ||||||| | ||||||||||  | || |||||||||||  ||||| | | |||| |||||| ||||||||| ||||||||||||||||||||| | ||||    
T  6804694 tgatagaaatggagagagaaagtgcattgaggtggtgggggcaagcagggagatggattgtggagggtggttggttagatatggtgttgagagactatga 6804793  T
Q  237 taa 239  Q
    |||    
T  6804794 taa 6804796  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 7495132 - 7495182
Alignment:
Q  141 tagagaaggagagagaagtttcaatgaggtggtggaagcaaggaagaagat 191  Q
    |||||||||||||||||    ||||||||||||||||||||| ||||||||    
T  7495132 tagagaaggagagagaaagaccaatgaggtggtggaagcaagcaagaagat 7495182  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 55193706 - 55193672
Alignment:
Q  206 ggtggttagatatggtgttgagagtccatgataag 240  Q
    |||||||||||||||||||||||||||||||||||    
T  55193706 ggtggttagatatggtgttgagagtccatgataag 55193672  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 37373741 - 37373791
Alignment:
Q  141 tagagaaggagagagaagtttcaatgaggtggtggaagcaaggaagaagat 191  Q
    |||||||||||||||||    ||||||||||||||||||||| ||||||||    
T  37373741 tagagaaggagagagaaagaccaatgaggtggtggaagcaagcaagaagat 37373791  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 26487720 - 26487770
Alignment:
Q  141 tagagaaggagagagaagtttcaatgaggtggtggaagcaaggaagaagat 191  Q
    |||||||||||||||||    ||||||||||||||||||||| ||||||||    
T  26487720 tagagaaggagagagaaagaccaatgaggtggtggaagcaagcaagaagat 26487770  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 41768604 - 41768706
Alignment:
Q  138 tgatagagaaggagagagaagtttcaatgaggtggtggaagcaaggaagaagatcgattgtagagggtggt-ggttagatatggtgttgagagtccatga 236  Q
    ||||||| | ||||||||||  | || |||||||||||  ||||| | | |||| | |||| ||||||||| ||||||||||||||||||||| | ||||    
T  41768604 tgatagaaatggagagagaaagtgcattgaggtggtgggggcaagtagggagatgggttgtggagggtggttggttagatatggtgttgagagactatga 41768703  T
Q  237 taa 239  Q
    |||    
T  41768704 taa 41768706  T

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