View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_high_65 (Length: 226)
Name: NF14236_high_65
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13394039 - 13394262
Alignment:
| Q |
1 |
aatagtaatgggaaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatacttacatgttgatagcagtga |
100 |
Q |
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| T |
13394039 |
aatagtaatgggaaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatacttacatgttgatagcagtga |
13394138 |
T |
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| Q |
101 |
gtaaatcatcaccttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttcattgcaacttggtaaga |
200 |
Q |
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| T |
13394139 |
gtaaatcatcaccttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttcattgcaacttggtaaga |
13394238 |
T |
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| Q |
201 |
caaatatatattttagttcctttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13394239 |
caaatatatattttagttcctttg |
13394262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 13397156 - 13397352
Alignment:
| Q |
13 |
aaagtgcctttgttatgtgctgcttctgcttttgttggactagcaattgctttggttatggagcatacttacatgttgatagcagtgagtaaatcatcac |
112 |
Q |
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||||| |||||| ||||| |||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
13397156 |
aaagtacctttgctatgttctgcttgtgcctttgttggactagcaattgccttggttatggagcatatttacatgttgatagcagtgagtaaatcaccac |
13397255 |
T |
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| Q |
113 |
cttctttaattaattgggatcctgattctccttctgctaaatccttaacatggttggctggttttttcttcattgcaacttggtaagacaaatatat |
209 |
Q |
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|||||||| || |||||||| ||||||| |||||| || ||||||| || |||||||||||||||| |||| ||||||||||||| ||| |||| |
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| T |
13397256 |
cttctttacttgattgggataatgattcttcttctgtcaagtccttaatatccttggctggttttttctacattacaacttggtaagagaaacatat |
13397352 |
T |
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