View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_low_12 (Length: 555)

Name: NF14236_low_12
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_low_12
NF14236_low_12
[»] chr4 (15 HSPs)
chr4 (1-285)||(31150704-31150988)
chr4 (358-547)||(31150437-31150626)
chr4 (1-180)||(31162086-31162263)
chr4 (410-545)||(31161733-31161868)
chr4 (4-177)||(31489071-31489244)
chr4 (76-176)||(31476558-31476658)
chr4 (64-168)||(31496486-31496590)
chr4 (4-169)||(31020316-31020481)
chr4 (411-516)||(31034102-31034207)
chr4 (1-153)||(31159734-31159886)
chr4 (64-168)||(31501656-31501760)
chr4 (384-434)||(31159451-31159501)
chr4 (4-169)||(31030197-31030362)
chr4 (476-545)||(31476882-31476951)
chr4 (406-496)||(31528549-31528639)
[»] chr6 (7 HSPs)
chr6 (64-173)||(33642147-33642256)
chr6 (64-173)||(33306927-33307036)
chr6 (67-153)||(13608607-13608693)
chr6 (64-175)||(31566654-31566765)
chr6 (67-173)||(33403052-33403158)
chr6 (64-169)||(33390518-33390623)
chr6 (140-184)||(12781930-12781974)
[»] chr8 (1 HSPs)
chr8 (100-153)||(6472955-6473008)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31150988 - 31150704
Alignment:
Q  1 ttctatgatgttgatccatcagagatgcgatatcaaaaaggatgttatgctgaagcctgagcgaaacatgaagaaagattccaacaaaactttgaaattg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31150988 ttctatgatgttgatccatcagaggtgcgatatcaaaaaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaaaactttgaaattg 31150889  T
Q  101 tgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatcttccttattgatgcacttacatgtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150888 tgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatcttccttattgatgcacttacatgtgc 31150789  T
Q  201 gaattttaaagctttgctttgacacataaatttagtaattgatcacgacgtcatcgagaaactctattaattaatcaaaagagag 285  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  31150788 aaattttaaagctttgctttgacacataaatttagtaattgatcacgacgtcctcgagaaactatattaattaatcaaaagagag 31150704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 358 - 547
Target Start/End: Complemental strand, 31150626 - 31150437
Alignment:
Q  358 tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150626 tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt 31150527  T
Q  458 tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31150526 tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc 31150437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 31162263 - 31162086
Alignment:
Q  1 ttctatgatgttgatccatcagagatgcgatatcaaaaaggatgttatgctgaagcctgagcgaaacatgaagaaagattccaacaaaactttgaaattg 100  Q
    ||||||||||||||||| |  |||||| ||||||||||||||  ||||| ||||||||     ||||||||| |||||||||||||| ||| ||| || |    
T  31162263 ttctatgatgttgatccttatgagatgagatatcaaaaaggaaattatgttgaagcctttttcaaacatgaacaaagattccaacaagactctgagatgg 31162164  T
Q  101 tgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatcttcctt 180  Q
    ||||||||||||||||||| |  |||||||| |||||  ||||||| |||||||| ||| ||||||||||||||||||||    
T  31162163 tgcaaagatggagggaagctcaaacacaagtcgccaa--tctctggttgggatgtgcgtcataagtaagtaatcttcctt 31162086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 410 - 545
Target Start/End: Complemental strand, 31161868 - 31161733
Alignment:
Q  410 agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt 509  Q
    |||||||||||||||| ||||| ||| | |||||  |||||||||||| | | | |||||||||  ||||||  |||||| |||||| |  | | |||||    
T  31161868 agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt 31161769  T
Q  510 agaaaaacatttacttttggactcgcttgatgatgt 545  Q
    ||||||||||||||||||||| ||| ||||||||||    
T  31161768 agaaaaacatttacttttggattcggttgatgatgt 31161733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 177
Target Start/End: Original strand, 31489071 - 31489244
Alignment:
Q  4 tatgatgttgatccatcagagatgcgatatcaaaaaggatgttatgctgaagcctgagcgaaacatgaagaaagattccaacaaaactttgaaattgtgc 103  Q
    |||||||||||||| || ||| || || |||||||||||  ||| | ||||||||   | ||||||||| ||| |||||||||  ||| | |  | || |    
T  31489071 tatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaacattccaacatgactctcatgtggtac 31489170  T
Q  104 aaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatcttc 177  Q
    |||||||||||||||| |||||||||||||  ||| |||| || |||||| | ||| ||||||||| |||||||    
T  31489171 aaagatggagggaagctctgacacaagtggggaatatctcaggctgggatcttcgtgataagtaagcaatcttc 31489244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 31476558 - 31476658
Alignment:
Q  76 agattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaagtaatct 175  Q
    |||||| ||||| ||| | |||| |||| | ||||||||| ||| ||||||||||| ||| |||||||||| |||||| ||||| |||||||| ||||||    
T  31476558 agattcaaacaagactctcaaatggtgctacgatggagggcagctctgacacaagtcgccgatctctctggttgggatctacgtgataagtaaataatct 31476657  T
Q  176 t 176  Q
    |    
T  31476658 t 31476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 31496486 - 31496590
Alignment:
Q  64 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 163  Q
    ||||||||| |||||||||||||| ||| | | || |||||||||||||||||||| || | |||||| ||  |||||||||| |||||| ||| | |||    
T  31496486 aaacatgaacaaagattccaacaagactctcagatggtgcaaagatggagggaagctctaatacaagtcgctgatctctctggttgggatctacatgata 31496585  T
Q  164 agtaa 168  Q
    |||||    
T  31496586 agtaa 31496590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 31020481 - 31020316
Alignment:
Q  4 tatgatgttgatccatcagagatgcgatatcaaaaaggatgttatgctgaagcctgagcgaaacatgaagaaagattccaacaaaactttgaaattgtgc 103  Q
    |||||||||||||| || ||| || || |||||||||||  ||| | ||||||||   | ||||||||| ||| |||||||||  ||| | |  | || |    
T  31020481 tatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaacattccaacatgactctcatgtggtac 31020382  T
Q  104 aaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaag 169  Q
    |||| ||||||||||| |||||||||||||  ||| ||||||| |||||| | ||| |||||||||    
T  31020381 aaagttggagggaagctctgacacaagtggggaatatctctggctgggatcttcgtgataagtaag 31020316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 516
Target Start/End: Complemental strand, 31034207 - 31034102
Alignment:
Q  411 gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta 510  Q
    |||||||||||| |||||||||||  ||||||  |||||||||  |||||| | |||||||||| ||||||| |||||  |||||| | || | ||||||    
T  31034207 gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta 31034108  T
Q  511 gaaaaa 516  Q
    ||||||    
T  31034107 gaaaaa 31034102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31159886 - 31159734
Alignment:
Q  1 ttctatgatgttgatccatcagagatgcgatatcaaaaaggatgttatgctgaagcctgagcgaaacatgaagaaagattccaacaaaactttgaaattg 100  Q
    ||||||||||||||||| || ||| || || ||||||| ||| ||||||  ||||||   || ||||| |||||||||||||||||  | |  || || |    
T  31159886 ttctatgatgttgatccttctgaggtgagacatcaaaatggaagttatggagaagcccttgccaaacacgaagaaagattccaacatgaatcagagatgg 31159787  T
Q  101 tgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 153  Q
    | ||||||||||||| |   || |||||||| |||||||||||||| ||||||    
T  31159786 tacaaagatggagggcaagtctaacacaagtcgccaatctctctggttgggat 31159734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 31501656 - 31501760
Alignment:
Q  64 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 163  Q
    ||||||||| ||| |||||||||| ||| | | || |||| ||||||||||||||| ||||||||||| |||  ||| ||||| || ||| ||||| |||    
T  31501656 aaacatgaacaaatattccaacaagactctcagatggtgctaagatggagggaagctctgacacaagtcgccggtctatctggttgcgatctacgtgata 31501755  T
Q  164 agtaa 168  Q
    |||||    
T  31501756 agtaa 31501760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Complemental strand, 31159501 - 31159451
Alignment:
Q  384 taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagat 434  Q
    |||||||| |||||| ||| ||||||||||||||||||| |||||||||||    
T  31159501 taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagat 31159451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 31030362 - 31030197
Alignment:
Q  4 tatgatgttgatccatcagagatgcgatatcaaaaaggatgttatgctgaagcctgagcgaaacatgaagaaagattccaacaaaactttgaaattgtgc 103  Q
    |||||||||||||| || ||| || || |||||||||||  ||| | ||||||||   | ||||||||| ||| |||||||||  | | | |  | || |    
T  31030362 tatgatgttgatccttctgaggtgagacatcaaaaaggaatttacggtgaagccttttccaaacatgaacaaacattccaacatgaatctcatgtggtac 31030263  T
Q  104 aaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagtaag 169  Q
    |||| ||||||||||| |||||||||||||  ||| ||||||| |||||| | ||| |||||||||    
T  31030262 aaagttggagggaagctctgacacaagtggggaatatctctggctgggatcttcgtgataagtaag 31030197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 545
Target Start/End: Original strand, 31476882 - 31476951
Alignment:
Q  476 atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgt 545  Q
    ||||||| |||||| ||||||||  ||| ||||||||||| | |||||||||||||||  ||||||||||    
T  31476882 atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgt 31476951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 496
Target Start/End: Complemental strand, 31528639 - 31528549
Alignment:
Q  406 gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctc 496  Q
    ||||||||| ||||||| ||||||||||| |||||||| |||  || ||| ||||| |  ||||||||  ||||||| |||| ||||||||    
T  31528639 gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctc 31528549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 33642147 - 33642256
Alignment:
Q  64 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 163  Q
    ||||||||| |||||||||||||| ||||| |||| |||  ||||||||||||||| || | ||||||||  | | ||||||| |||||| ||||| |||    
T  33642147 aaacatgaacaaagattccaacaagactttcaaatggtgtcaagatggagggaagctctaaaacaagtggggagtatctctggttgggatctacgtgata 33642246  T
Q  164 agtaagtaat 173  Q
    ||||||||||    
T  33642247 agtaagtaat 33642256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 33307036 - 33306927
Alignment:
Q  64 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 163  Q
    ||||||||| |||||||||||||| ||||||| || |||  ||||||||||||||| || | ||| ||||  | | ||||||| |||||| ||||| |||    
T  33307036 aaacatgaacaaagattccaacaagactttgagatggtgtcaagatggagggaagctctaaaacatgtggggagtatctctggttgggatctacgtgata 33306937  T
Q  164 agtaagtaat 173  Q
    ||||||||||    
T  33306936 agtaagtaat 33306927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 13608607 - 13608693
Alignment:
Q  67 catgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 153  Q
    ||||||||||||||| || ||||||| ||    |||||||||||||||| ||| || |||||||| |||||||||||||| ||||||    
T  13608607 catgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 13608693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 31566654 - 31566765
Alignment:
Q  64 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 163  Q
    ||||||||| ||||||||| |||| ||| | | || |||  ||||||||| ||||| || | ||||||||| | | ||| ||| |||||| ||||| |||    
T  31566654 aaacatgaacaaagattccgacaagactctcagatggtgtcaagatggagagaagctctaaaacaagtggcgagtatctttggttgggatctacgtgata 31566753  T
Q  164 agtaagtaatct 175  Q
    ||||||||||||    
T  31566754 agtaagtaatct 31566765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 33403158 - 33403052
Alignment:
Q  67 catgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttataagt 166  Q
    |||||| ||||||||||||||  |||||| || |||  ||||||||||||||| || | ||||||||  | | | ||||| |||||| || || ||||||    
T  33403158 catgaaaaaagattccaacaaggctttgagatggtgtcaagatggagggaagctctaaaacaagtggggagtatatctggttgggatctatgtgataagt 33403059  T
Q  167 aagtaat 173  Q
    |||||||    
T  33403058 aagtaat 33403052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 33390623 - 33390518
Alignment:
Q  64 aaacatgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggatgtacgttata 163  Q
    ||||||||| |||||||||||||||||| | | || |||  ||||||||| ||||| || | ||||||||  | | ||||||| |||||| || || |||    
T  33390623 aaacatgaacaaagattccaacaaaactctcagatggtgtcaagatggagagaagctctaaaacaagtggggagtatctctggttgggatctatgtgata 33390524  T
Q  164 agtaag 169  Q
    ||||||    
T  33390523 agtaag 33390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 12781974 - 12781930
Alignment:
Q  140 tctctggatgggatgtacgttataagtaagtaatcttccttattg 184  Q
    ||||||| |||||| ||||| ||||||||| ||||||||||||||    
T  12781974 tctctggctgggatctacgtgataagtaagcaatcttccttattg 12781930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 6473008 - 6472955
Alignment:
Q  100 gtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 153  Q
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T  6473008 gtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 6472955  T

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