View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_low_14 (Length: 516)
Name: NF14236_low_14
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 2173515 - 2173016
Alignment:
| Q |
1 |
atgaaatgggacattggaagatcaaatgcaatgatgctggtgttagaatggtcgaggcaaaagccaaaggaagtgtcgaagagtggttacgaagcgtgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173515 |
atgaaatgggacattggaagatcaaatgcaatgatgctggtgttagaatggtcgaggcaaaagccaaaggaagtgtcgaagagtggttacgaagcgtgga |
2173416 |
T |
|
| Q |
101 |
tagggaaaaagaacttaaacttgtttattgggaagatatgcttcaaaagccttattattggtccactttttatgtccaggtttgaattttctgtactgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173415 |
tagggaaaaagaacttaaacttgtttattgggaagatatgcttcaaaagccttattattggtccactttttatgtccaggtttgaattttctgtactgaa |
2173316 |
T |
|
| Q |
201 |
aaatgcttttgatgagatatattaagagatttaaagatcttaatagcaaataaataatacactctttttcaatttttaagtatattcatgcttcaatatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173315 |
aaatgcttttgatgagatatattaagagatttaaagatcttaatagcaaataaataatacactctttttcaatttttaagtatattcatgcttcaatatg |
2173216 |
T |
|
| Q |
301 |
atcatcttaataattgaatcagcttcttgttaacatttttgtgagataaattcatattcatgctttaaaatgatcatcttaaattctgatcttaatttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2173215 |
atcatcttaataattgaatcagcttcttgttaacatttttgtcagataaattcatattcatgttttaaaatgatcatcttaaattctgatcttaatttca |
2173116 |
T |
|
| Q |
401 |
gctgactgaatttgaagaaggtggattagcaattggcctaagctgcactcatctcttagcagattcaatttgtgcaacaaaattcatgaaagcttgggct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2173115 |
gctgactgaatttgaagaaggtggattagcaattggcctaagctgcactcatctcttagcagattccatttgtgcaacaaaattcatgaaagcttgggct |
2173016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University