View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_2 (Length: 1010)
Name: NF14236_low_2
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 913; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 19 - 979
Target Start/End: Original strand, 40115677 - 40116637
Alignment:
| Q |
19 |
tgtagcgccggaatcaaggatccaatctggctcacccataaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataacca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115677 |
tgtagcgccggaatcaaggatccaatctggctcacccataaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataacca |
40115776 |
T |
|
| Q |
119 |
tgaagtttgtagcacgttttggcagtgtgtccagatttgtcccagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaag |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115777 |
tgaagtttgtagcacgttttggaagtgtgtccagatttgtcacagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaag |
40115876 |
T |
|
| Q |
219 |
agtaattgccatgattaggtgcatagccccgtttggaagtagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcatcacg |
318 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40115877 |
agtaatttccatgattaggtgcatagccccgtttggaagtagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcttcacg |
40115976 |
T |
|
| Q |
319 |
ttgcagaacattttcatagtccacaagtagatcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactca |
418 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115977 |
ttgcagaacattttcatagtccataagtagatcatgaagctcaacaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactca |
40116076 |
T |
|
| Q |
419 |
gatccaagcccattcagagcatgaataaccaagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggt |
518 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116077 |
gatccaagcccattgagagcatgaataaccaagtcatcatcatcaacaggtttgttgatgacagcaagctcatcagagattgatttaataccttgtaggt |
40116176 |
T |
|
| Q |
519 |
attcagaaactgatttggagccctttgttgtacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggt |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116177 |
attcagaaactgatttggagccctttgttgtacgagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggt |
40116276 |
T |
|
| Q |
619 |
atcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgatgatagcgtgcaagatcaattgatcttgtctt |
718 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116277 |
atcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctgatcgacagatgtgatgatagcgtgcaagatcaattgatcttgtctt |
40116376 |
T |
|
| Q |
719 |
gtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatcaatgaaccctttaagatcatatccaatgaaaagagcattcatttgga |
818 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116377 |
gtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatagatgaaccctttaagatcatatccaatgaaaagagcattcatttgga |
40116476 |
T |
|
| Q |
819 |
cattccaagctgggtaatttgtacttttgagtttaagtgaatgttgggtattgaggacagttacagtgttggttccaaccatgaaactgcaaccattgtt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116477 |
cattccaagctgggtaatttgtacttttgagtttaagtgaatgttgggtattgaggacagttacagtgttggttccaaccatgaaactgcaaccattgtt |
40116576 |
T |
|
| Q |
919 |
gttgttatttgtggaagagctattgttattagtatttgcggaagacatggtgaaagggggg |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116577 |
gttgttatttgtggaagagctattgttattagtatttgcggaagacatggtgaaagggggg |
40116637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 599 - 816
Target Start/End: Original strand, 9039282 - 9039499
Alignment:
| Q |
599 |
gcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagcagttatgatgctctaatcgacagatgtgatgatagcgtgca |
698 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || | ||| |||||||| | | || |||||||| | ||||||||||||||| ||||| || | |
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| T |
9039282 |
gcaaacatcttcttgagagtatcccaagcttgttgggaggatttgacattgcctaatgtcgtgatgatgctatgatcgacagatgtgataatagcatgta |
9039381 |
T |
|
| Q |
699 |
agatcaattgatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatcaatgaaccctttaagatcatatccaat |
798 |
Q |
| |
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|| | ||| || |||||||||||||| || |||||||||| |||| || ||| ||| |||||| |||| || || ||| | || ||||||||||| |
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| T |
9039382 |
gtatgagttggtcctgtcttgtccagtagttgtaatctggatctgttttggcagggcacaattttgtaccattgataaaacctgtgaggtcatatccaat |
9039481 |
T |
|
| Q |
799 |
gaaaagagcattcatttg |
816 |
Q |
| |
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||| || ||||||||||| |
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|
| T |
9039482 |
gaatagtgcattcatttg |
9039499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 349 - 624
Target Start/End: Complemental strand, 3016628 - 3016353
Alignment:
| Q |
349 |
atcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataacc |
448 |
Q |
| |
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||||||||| ||| |||| || |||| |||||| || || | |||||| |||| | |||||| |||| || ||||| ||||| |||||||||| || |
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| T |
3016628 |
atcatgaagttcatcaaatgcgatggcattctcccgagttctaagggctgcagcgatctctttgaactcggacccaaggccattgggagcatgaatcacg |
3016529 |
T |
|
| Q |
449 |
aagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttg |
548 |
Q |
| |
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| ||||||||||||| ||| ||||| |||| ||||| |||||||| |||| ||| || |||| ||||||||||| || |||||||| || || | | |
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| T |
3016528 |
agatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttgatggcttggaggtattcagagacggatttggaacctttagagg |
3016429 |
T |
|
| Q |
549 |
tacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatccca |
624 |
Q |
| |
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| | || | ||||| ||||||||||||||||| | ||| || ||||| ||||||||||| || ||| ||||||| |
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|
| T |
3016428 |
ttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacattttgttaaggatatccca |
3016353 |
T |
|
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