View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_20 (Length: 474)
Name: NF14236_low_20
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 42156234 - 42155801
Alignment:
| Q |
1 |
ctcctaatcctccttcctcctttggtaggcacaccttaattattccaacttacccaattaattgaattcagacaatttcgtttaagacattccaagaagc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42156234 |
ctcctaatcctccttcatcctttggtaggcacacctta----ttccaacttacccaattaattgaattcagaaaatttcgtttaagacattccaagaagc |
42156139 |
T |
|
| Q |
101 |
tttaaagaaacaaaaatagaacaattaatggaatgttgccagtaagtactacggaccaaatttatgagcaccacctttcctcctatcaaaaggtgccttt |
200 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156138 |
tttaaagaaagaaaaatagaacaat----ggaatgttgccagtaagtactacggaccaaatttatgagcaccacctttcctcctatcaaaaggtgccttt |
42156043 |
T |
|
| Q |
201 |
ctttccaccaagataatatcttcatcacagagtccaacctttgttttctatgtttccaacctccttggattttcacctactggtagaccccaaaaccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156042 |
ctttccaccaagataatatcttcatcacagagtccaacctttgttttctatgtttccaacctccttggattttcacctactggtagaccccaaaaccaaa |
42155943 |
T |
|
| Q |
301 |
atggtactttatatcaatggtacaaaacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgctacaagatcactgta |
400 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155942 |
atggtactt--tatcaatggtacaaaacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgctacaagatcactgta |
42155845 |
T |
|
| Q |
401 |
aaaagtgttcattcatacattcatttttaatcatcacactatca |
444 |
Q |
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| T |
42155844 |
aaaagtgttcattcatacattcatttttaatcatcacactatca |
42155801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 436
Target Start/End: Complemental strand, 42166080 - 42165932
Alignment:
| Q |
286 |
gaccccaaaaccaaaatggtactttatatcaatggtacaaaacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgc |
385 |
Q |
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||||| |||||||||| |||||||||| || |||| ||||||||||||||||||| | ||||| | ||| ||| || || ||||||||||||||| | |
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| T |
42166080 |
gacccaaaaaccaaaacggtactttat--cagtggtgcaaaacaagaagtttgaagaagctttcatgaaacgttaatttgtattttgttatattagttac |
42165983 |
T |
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| Q |
386 |
tacaagatcactgtaaaaagtgttcattcatacattcatttttaatcatca |
436 |
Q |
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| || |||||| |||||||||| |||| ||| ||||||||| ||||||||| |
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| T |
42165982 |
ttcatgatcaccgtaaaaagtgatcatacattcattcatttctaatcatca |
42165932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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