View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14236_low_22 (Length: 439)
Name: NF14236_low_22
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_22 |
 | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 31150963 - 31151384
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31150963 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
31151062 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151063 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
31151162 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151163 |
atcatccctgaatgaaaaaatg-attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
31151261 |
T |
|
| Q |
301 |
tcataataatttctccttggagatgacgagannnnnnnnnnnnnnnnnnnnnnnattttgatgatactattattactgctggtgctggccatctgaataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151262 |
tcataataatttctccttggagatgacgagatgctgctactgctgctgctgctgattttgatgatactattattactgctggtgctggccatctgaataa |
31151361 |
T |
|
| Q |
401 |
gctaaactgttagaggatgatat |
423 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31151362 |
gctaaactgttagaggatgatat |
31151384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 31489093 - 31488783
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
||||| || |||||||||||||| || ||||| ||||||||| ||||| | | |||| | ||||| ||| | |||||||||||||| |||||| || |
|
|
| T |
31489093 |
acctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaaaaacttgactgtagtgaaggatgtattccaattctcgcaagcaccaagttg |
31488994 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
||||||||||||| || |||| ||| ||| |||| |||||| |||||||||| |||| ||| || |||||||| ||||||||||| | |||||||| |
|
|
| T |
31488993 |
aggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtgctatcgattcacctttttgaagcttagt |
31488894 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
||||| || || | |||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| |||||| ||| ||||||||||| |
|
|
| T |
31488893 |
gtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagcgagtatcttcacctctgaaggtgacaaacacg |
31488794 |
T |
|
| Q |
301 |
tcataataatt |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
31488793 |
tcataataatt |
31488783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 31529120 - 31529424
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| | || ||||| ||| | | |||||| ||||| |||||| || |
|
|
| T |
31529120 |
acctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagttgtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttg |
31529219 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
||||||||||||| || ||||| || |||| ||| || ||||| |||| || || |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31529220 |
aggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagcacgaaggagttcaggtgctatagattcacctttcttaagcttagt |
31529319 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
||||| || |||| || ||||| | || |||| ||||| | ||||||||||||||||||||||| ||||| ||| ||||| ||||||| ||||||| |
|
|
| T |
31529320 |
gtcatctctaaatgcaacaatgcctcttatttggagggcggaaaaaagatgatcagtgaagttgaatcgtgtgtctgctcctctgaagctgataaacacg |
31529419 |
T |
|
| Q |
301 |
tcata |
305 |
Q |
| |
|
||||| |
|
|
| T |
31529420 |
tcata |
31529424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 31030340 - 31030650
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
||||| || |||||||||||||| || ||||| ||||||||| ||||||| | |||| || | ||| ||| ||||||||||||| |||||| || |
|
|
| T |
31030340 |
acctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttg |
31030439 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
||||||||||||| || |||| ||| ||| |||| |||||| |||||||||| |||| ||| || |||| ||||||||||||||| | || ||||| |
|
|
| T |
31030440 |
aggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattagt |
31030539 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
|| || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
31030540 |
gtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacaca |
31030639 |
T |
|
| Q |
301 |
tcataataatt |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
31030640 |
tcataataatt |
31030650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 31159861 - 31160165
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
||||| || ||||||||||||||||| | ||| |||||||| ||||||| | |||| || ||||| ||| | ||||| |||||||| ||||| || |
|
|
| T |
31159861 |
acctcagaaggatcaacatcatagaaaatagggagaacacgagttccagaaacttgactgcagtgaaggatgtattccaactctcgcaagcaccatgttg |
31159960 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
||||||||||||| || ||||| | |||| ||||| || ||| |||||||||| ||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
31159961 |
aggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaattgcatgaaggagctcgggtgctatggattcacctttcttcaggttaga |
31160060 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
|||||||||||||| || |||| ||||||||| |||||||||||||||||||| | || ||| | |||| |||| ||||||||||| ||||| ||| |
|
|
| T |
31160061 |
atcatccctgaatgcaacgatgccttttctttgaagggcagcaaaaagatgatcggcaaaattgttgtgtgtgtcttggcctctaaagctcacaaaaacg |
31160160 |
T |
|
| Q |
301 |
tcata |
305 |
Q |
| |
|
||||| |
|
|
| T |
31160161 |
tcata |
31160165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 31020459 - 31020769
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
||||| || |||||||||||||| || ||||| ||||||||| ||||||| | |||| || | ||| ||| ||||||||||||| |||||| || |
|
|
| T |
31020459 |
acctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttgactgcagtcaaggatgtgtaccaattctcgcaagcaccaagttg |
31020558 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
|||||| |||||| || |||| ||| ||| |||| |||||| |||||||||| |||| ||| || |||| ||||||||||||||| | || |||| |
|
|
| T |
31020559 |
aggaagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcacgaatgagctcgggtggtatggattcacctttttgaagattagc |
31020658 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
|| || || |||| |||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
31020659 |
gtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttcgcctctaaaggtgacaaacaca |
31020758 |
T |
|
| Q |
301 |
tcataataatt |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
31020759 |
tcataataatt |
31020769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 31501609 - 31501308
Alignment:
| Q |
10 |
ggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcat |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||||| || | || || ||| || || |||||| |||| ||||||| ||||||||||| |
|
|
| T |
31501609 |
ggatcaacatcatagaaaacaggcagaacatgttttttagatacgtggacgcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcat |
31501510 |
T |
|
| Q |
110 |
agttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccct |
209 |
Q |
| |
|
||||| | |||| ||| |||||||||| | ||| ||||||||||| ||||| || || | |||||||||||||||||| || ||||| |||||||| |
|
|
| T |
31501509 |
agttccttgagaggaccgcaacaaaaatataagaatcttcaattgcacgaagaagctcggatgctatggattcaccttttggaagattagtgtcatccct |
31501410 |
T |
|
| Q |
210 |
gaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataa |
309 |
Q |
| |
|
|||| || ||||| || ||| | | |||| |||||||||||| |||||| ||| ||| || |||| ||||||||| |||||||| | ||||||||| |
|
|
| T |
31501409 |
aaatgcaagaatgccttctctgttgaaggcatcaaaaagatgataagtgaaattgttgcgagtgtcttcacctctaaaagtgacaaacgcatcataataa |
31501310 |
T |
|
| Q |
310 |
tt |
311 |
Q |
| |
|
|| |
|
|
| T |
31501309 |
tt |
31501308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 306
Target Start/End: Complemental strand, 31476433 - 31476203
Alignment:
| Q |
76 |
tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta |
175 |
Q |
| |
|
||||||||| ||| |||||| |||| |||| |||||||| || || |||||||| |||| |||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
31476433 |
tccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaattgcatgaaagagttcaggtgcta |
31476334 |
T |
|
| Q |
176 |
tggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatc |
275 |
Q |
| |
|
||||||||||||| | || ||||| |||||||| |||| ||||| | |||| || |||||| ||||||| ||||||||| ||| ||| ||||| |
|
|
| T |
31476333 |
tggattcacctttttgaagattagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaaggaaatcagtgaaattgttgcgagtatc |
31476234 |
T |
|
| Q |
276 |
tttacctctaaagctgacaaacacgtcataa |
306 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||| |
|
|
| T |
31476233 |
ttcacctctgaagctcacaaacacgtcataa |
31476203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 317
Target Start/End: Complemental strand, 31496350 - 31496132
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
|||| ||||||||||| | || || ||||||||||||| |||||||| ||||||||| | |||||| | |||| |||||||||||||||| || ||| |
|
|
| T |
31496350 |
tgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcacaaaggagcttaggtcctatggattcaccttttggaagatta |
31496251 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
298 |
Q |
| |
|
|| ||||| || |||| | |||||| || ||| || | || | ||||||||||||||||||| ||| ||| || || | |||||||||| ||||||||| |
|
|
| T |
31496250 |
gtgtcatctctaaatgcagaaatgccttctctgtggaaggtatcaaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaaca |
31496151 |
T |
|
| Q |
299 |
cgtcataataatttctcct |
317 |
Q |
| |
|
||||||||| ||| ||||| |
|
|
| T |
31496150 |
cgtcataatgattgctcct |
31496132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 31162338 - 31162471
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
||||||||||||||||||||| || ||||||| |||||| |||||||| | ||||||| |||||| || | | | |||||||||||||| || |||||| |
|
|
| T |
31162338 |
tgaggaagcatagttcttagaaaataccacaatgaaaatcagagagtct-cgattgctccaaggagctctgatccaatggattcacctttgttgagctta |
31162436 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttg |
233 |
Q |
| |
|
| ||||||||| |||| |||||| | ||||||||| |
|
|
| T |
31162437 |
gaatcatccctaaatgcaaaaataccttttctttg |
31162471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 31023490 - 31023670
Alignment:
| Q |
124 |
accacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgc |
223 |
Q |
| |
|
||||||| |||||| |||||| |||||||||| || |||| | ||||| ||||||||||||||||| ||| | | ||| ||| |||||| || || | |
|
|
| T |
31023490 |
accacaataaaaat-tgagaggcttcaattgcatgagggagctatggtgcaatggattcacctttcttgagcattgcatcgtccttgaatgcaatgatac |
31023588 |
T |
|
| Q |
224 |
attttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcata |
305 |
Q |
| |
|
||||||| | | || |||||||||||||||| |||||||| ||| || ||||||||| | ||||| |||||||||||||| |
|
|
| T |
31023589 |
cttttcttcggaaggaagcaaaaagatgatcaatgaagttgtagcgagtgtctttacctttgaagctcacaaacacgtcata |
31023670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 260
Target Start/End: Complemental strand, 31482268 - 31482085
Alignment:
| Q |
77 |
ccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctat |
176 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||| ||||||| || ||||| | |||||||||||| |||||||||| |||| |||| | ||| |||| |
|
|
| T |
31482268 |
ccaattcacgcaagcaccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagacttcaattgcacgaaagagtgcgggttctat |
31482169 |
T |
|
| Q |
177 |
ggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaa |
260 |
Q |
| |
|
|||| |||| | || || | ||| ||||||||||| | |||| ||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
31482168 |
ggatgcaccactgttgagatgtctattatccctgaatgcagcaatgttttttcttcggagggcaccaaaaagatgatcagtgaa |
31482085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 31244362 - 31244241
Alignment:
| Q |
184 |
cctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctc |
283 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | || ||||| |||| | || || | ||||||| ||||||||||| ||| |||||| || ||||| |
|
|
| T |
31244362 |
cctttcttgagctttgtatcatccctgaaggtaacaatgccttttttatggagagtgccaaaaaggtgatcagtgaaattgttgcgtgtgtcgccacctc |
31244263 |
T |
|
| Q |
284 |
taaagctgacaaacacgtcata |
305 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
31244262 |
taaagctcacaaacacatcata |
31244241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 76 - 307
Target Start/End: Original strand, 12785602 - 12785833
Alignment:
| Q |
76 |
tccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgcta |
175 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||| || |||| ||| ||||||| |||||||||||| || |||| | ||||||| |
|
|
| T |
12785602 |
tccaattctcgcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgctctaaagagtccgggtgcta |
12785701 |
T |
|
| Q |
176 |
tggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatc |
275 |
Q |
| |
|
|| |||||||||| || || ||||| ||||| ||||||| | ||||| | |||||| |||||||||||||||||||| ||||| |||| |||||| || |
|
|
| T |
12785702 |
tgaattcaccttttttaagtttagtgtcatctctgaatgcattaatgcctcgtctttgtagggcagcaaaaagatgatcggtgaaattgaagcgtgtgtc |
12785801 |
T |
|
| Q |
276 |
tttacctctaaagctgacaaacacgtcataat |
307 |
Q |
| |
|
| ||||||||||| |||||||||||||||| |
|
|
| T |
12785802 |
tgggcctctaaagctcacaaacacgtcataat |
12785833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 12781337 - 12781643
Alignment:
| Q |
1 |
acctctgatggatcaacatcatagaacacaggcagaacacgttttccagatagttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactg |
100 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||| |||||||| | || | || ||||| ||| | ||||||||||||||||||||| || |
|
|
| T |
12781337 |
acctcagaaggatcaacatcatagaaaacaggaagaacgtgttttccatgttttttactgcaatgaaggatgtattccaattctcgcaaacaccaagttg |
12781436 |
T |
|
| Q |
101 |
aggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagt |
200 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| ||||||| |||||||||||| || |||| | ||||||||| |||| ||||| || || ||||| |
|
|
| T |
12781437 |
aggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgctctaaagagtccgggtgctatgaattcgccttttttaagtttagt |
12781536 |
T |
|
| Q |
201 |
atcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacg |
300 |
Q |
| |
|
||||| ||||||| | ||||| | |||||| ||||||||| ||| |||||| ||||| |||| |||||| ||| ||||||||||| ||||||||| |
|
|
| T |
12781537 |
gtcatctctgaatgcattaatgcctcgtctttgtagggcagcacaaaaatgatcggtgaaattgaagcgtgtgtctgggcctctaaagctcacaaacacg |
12781636 |
T |
|
| Q |
301 |
tcataat |
307 |
Q |
| |
|
||||||| |
|
|
| T |
12781637 |
tcataat |
12781643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 300
Target Start/End: Original strand, 12782166 - 12782387
Alignment:
| Q |
79 |
aattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatgg |
178 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||| || |||| |||| ||||||| ||||||||||| ||| ||| || | |||||||| |
|
|
| T |
12782166 |
aattctcgcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgcttgaatgaggtcggatgctatgg |
12782265 |
T |
|
| Q |
179 |
attcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatcttt |
278 |
Q |
| |
|
| | |||||| | || ||||| ||||| ||||||| |||||| | ||||||||| |||||| ||||||||||||||||||| |||| ||||| ||| | |
|
|
| T |
12782266 |
aattacctttttgaagattagtgtcatctctgaatgtaaaaattctttttctttgaagggcaccaaaaagatgatcagtgaaattgaaacgtgtgtctgt |
12782365 |
T |
|
| Q |
279 |
acctctaaagctgacaaacacg |
300 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
12782366 |
gcctctgaagctcacaaacacg |
12782387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 308
Target Start/End: Original strand, 33307172 - 33307381
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
|||||||||||||||| | ||||| || ||||||||| | |||| |||| |||||||||||||| |||||| |||| |||||||| || | || ||| |
|
|
| T |
33307172 |
tgaggaagcatagttccttgagaagactgcaacaaaaacccgagatccttcgattgctcgaaggagctcaggttctatagattcacccttttgaagatta |
33307271 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
298 |
Q |
| |
|
|| ||||||| |||| |||||||| |||| ||| |||||| |||||||| |||||| |||||| ||| || |||| |||||| ||| ||||||||| |
|
|
| T |
33307272 |
gtgtcatcccgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtaaagttgttgcgagtgtcttcacctctgaaggtgacaaaca |
33307371 |
T |
|
| Q |
299 |
cgtcataata |
308 |
Q |
| |
|
| |||||||| |
|
|
| T |
33307372 |
catcataata |
33307381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 33412604 - 33412824
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
|||||||||||||||| | || || || | || |||| |||||| |||| ||||| |||||||| |||||| ||||| ||||||||| || || || |
|
|
| T |
33412604 |
tgaggaagcatagttccttgaaaagactgcgacgaaaacctgagatccttcgattgcacgaaggagctcaggtcctatgacttcaccttttttaagattt |
33412703 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
298 |
Q |
| |
|
|| |||||||| |||| | |||| | ||| ||| || ||| ||||||||| ||||||||| ||| ||| || |||| |||||| ||| ||||||||| |
|
|
| T |
33412704 |
gtgtcatccctaaatgcataaatacctttggtttcaagtgcatcaaaaagataatcagtgaaattgttgcgagtgtcttcacctctgaaggtgacaaaca |
33412803 |
T |
|
| Q |
299 |
cgtcataataatttctccttg |
319 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
33412804 |
catcataataatttcttcttg |
33412824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 33265568 - 33265788
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
||||||||||||||| | || || ||| ||||||||| ||||| |||| |||||||||||||| || ||| | |||||||||||||| || ||| |
|
|
| T |
33265568 |
tgaggaagcatagtttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagatta |
33265667 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
298 |
Q |
| |
|
|| |||||| ||| || ||||| |||| |||| |||||| |||||||| ||| ||||| ||| || ||||||| |||||| ||| ||||||| | |
|
|
| T |
33265668 |
gtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaata |
33265767 |
T |
|
| Q |
299 |
cgtcataataatttctccttg |
319 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
33265768 |
catcataataatttcttcttg |
33265788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 33274712 - 33274932
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
||||||||||||||| | || || ||| ||||||||| ||||| |||| |||||||||||||| || ||| | |||||||||||||| || ||| |
|
|
| T |
33274712 |
tgaggaagcatagtttattgaaaagaccgcaacaaaaacttgagatccttcgattgctcgaaggagctcgggtccaatggattcaccttttggaagatta |
33274811 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
298 |
Q |
| |
|
|| |||||| ||| || ||||| |||| |||| |||||| |||||||| ||| ||||| ||| || ||||||| |||||| ||| ||||||| | |
|
|
| T |
33274812 |
gtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttcacctctgaaggtgacaaata |
33274911 |
T |
|
| Q |
299 |
cgtcataataatttctccttg |
319 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
33274912 |
catcataataatttcttcttg |
33274932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 310
Target Start/End: Original strand, 33390741 - 33390970
Alignment:
| Q |
81 |
ttctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggat |
180 |
Q |
| |
|
|||| |||||||||| |||| |||||||||| | ||||||||| ||||| ||| |||||| |||| |||| | |||| ||||||||| |||||||| |
|
|
| T |
33390741 |
ttcttgcaaacaccatgttgagaaagcatagtttcttgagaaaaccgcaacataaacctgagatccttcgattgattgaagaagttcaggtcctatggat |
33390840 |
T |
|
| Q |
181 |
tcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttac |
280 |
Q |
| |
|
|||||||| | || || | | ||||| ||| || ||||| |||| ||| ||||||| |||||||| |||| |||| ||| ||| || |||| || |
|
|
| T |
33390841 |
tcacctttttgaagatttctgttatcccgaaatacaagaatgccttttgtttccagggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttcac |
33390940 |
T |
|
| Q |
281 |
ctctaaagctgacaaacacgtcataataat |
310 |
Q |
| |
|
||| ||| |||||||||| |||||||||| |
|
|
| T |
33390941 |
ctcggaaggtgacaaacacatcataataat |
33390970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 33288261 - 33288350
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcaccttt |
188 |
Q |
| |
|
||||||||||||||| | ||||| || |||| |||| ||| || |||| |||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
33288261 |
tgaggaagcatagtttcttgagaatactgcaacgaaaacctgggatccttcgattgctcgaaggagctcaggtcctatggattcaccttt |
33288350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 319
Target Start/End: Original strand, 33403297 - 33403517
Alignment:
| Q |
99 |
tgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctta |
198 |
Q |
| |
|
|||||||||||||||| | || || || ||||| |||| |||| | ||| ||||||||||| || || ||| ||| ||||||||| | | || ||| |
|
|
| T |
33403297 |
tgaggaagcatagttccttgaaaagacgacaacgaaaacctgaaatcctttgattgctcgaagaagctcgggttctaaggattcaccctgttgaagatta |
33403396 |
T |
|
| Q |
199 |
gtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaaca |
298 |
Q |
| |
|
|| ||||| | |||| |||||||| |||| ||| |||||| |||||||| ||||||||| ||| || || |||| |||||||||| ||| ||||| |
|
|
| T |
33403397 |
gtgtcatctcgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtcttcacctctaaaggtgataaaca |
33403496 |
T |
|
| Q |
299 |
cgtcataataatttctccttg |
319 |
Q |
| |
|
| || ||||||||||| |||| |
|
|
| T |
33403497 |
catcgtaataatttcttcttg |
33403517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 9169557 - 9169603
Alignment:
| Q |
279 |
acctctaaagctgacaaacacgtcataataatttctccttggagatg |
325 |
Q |
| |
|
|||||||||| ||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
9169557 |
acctctaaaggtgaaaaacacatcataatgatttctccttggagatg |
9169603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 312
Target Start/End: Complemental strand, 17438083 - 17437870
Alignment:
| Q |
99 |
tgaggaagcatagt-tcttagagaaaaccacaacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagctt |
197 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||| |||||| |||| ||||||||||| || |||| | |||||||||||||||| | || || |
|
|
| T |
17438083 |
tgaggaagcatagtatctt-gagaaaaccgcaacaaaaacctgagatccttctattgctcgaagaagctcagatcctatggattcacctttttgaagatt |
17437985 |
T |
|
| Q |
198 |
agtatcatccctgaatgaaaaaatgcattttctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaac |
297 |
Q |
| |
|
||| ||||| | |||| ||||||| |||||||| ||||| |||||||| ||||||||| ||| ||| ||||||| |||||||||| |||||||| |
|
|
| T |
17437984 |
agtgtcatctcgaaatgcaaaaatgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgttgcgagtatcttcacctctaaaggtgacaaac |
17437885 |
T |
|
| Q |
298 |
acgtcataataattt |
312 |
Q |
| |
|
|| ||||||| |||| |
|
|
| T |
17437884 |
acatcataatgattt |
17437870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 128 - 320
Target Start/End: Original strand, 861 - 1053
Alignment:
| Q |
128 |
caacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattt |
227 |
Q |
| |
|
|||| |||| |||||| |||| |||| ||||||||| |||||| ||||||||||||| || || || || ||||||||||| | | |||| | ||| |
|
|
| T |
861 |
caacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttt |
960 |
T |
|
| Q |
228 |
tctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg |
320 |
Q |
| |
|
||||| ||||||||||||||| || |||||| ||| ||| ||||||| |||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
961 |
tctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttgg |
1053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 128 - 320
Target Start/End: Original strand, 9622 - 9814
Alignment:
| Q |
128 |
caacaaaaatctgagagtcttcaattgctcgaaggagttcaggtgctatggattcacctttcttcagcttagtatcatccctgaatgaaaaaatgcattt |
227 |
Q |
| |
|
|||| |||| |||||| |||| |||| ||||||||| |||||| ||||||||||||| || || || || ||||||||||| | | |||| | ||| |
|
|
| T |
9622 |
caacgaaaacctgagatccttcgattgttcgaaggagctcaggtcctatggattcaccctttggaagatttgtgtcatccctgaaagcataaataccttt |
9721 |
T |
|
| Q |
228 |
tctttgcagggcagcaaaaagatgatcagtgaagttgaggcgtgtatctttacctctaaagctgacaaacacgtcataataatttctccttgg |
320 |
Q |
| |
|
||||| ||||||||||||||| || |||||| ||| ||| ||||||| |||||| ||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9722 |
tctttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttgg |
9814 |
T |
|
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