View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_23 (Length: 437)
Name: NF14236_low_23
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 4590734 - 4591137
Alignment:
| Q |
19 |
acaagaacaaaatagaacattagagataaggttaaaagaatgtggcgatgacattctcaggttagataaagtgatttgtgctagctatggtgggagcaac |
118 |
Q |
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| T |
4590734 |
acaagaacaaaatagaacattagatataaggttaaaagaatgtggcgatgacattctcaggttagataaagtgatttgtgctagctatggtgggagcaac |
4590833 |
T |
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| Q |
119 |
aacaacatctgcgaaacaacagaatcacaagaattagccaaaataatgttggtggatggttgttttttgttggagtttctttttaagcttgacaagtaca |
218 |
Q |
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| T |
4590834 |
aacaacatctgcgaaacaacagaatcacaagaattagccaaaataatgttggtggatggttgttttttgttggagtttctttttaagcttgacaagtaca |
4590933 |
T |
|
| Q |
219 |
tggaagacgaatattattataacaatgattcaatctttaaagccgaggataaggtgttactgttatctgttttaaacgatgttacaatgcttgagaacca |
318 |
Q |
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| T |
4590934 |
tggaagacgaaaattattataacaatgattcaatctttaaagccgaggataaggtgttactgttatctgttttaaacgatgttacaatgcttgagaacca |
4591033 |
T |
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| Q |
319 |
aattcccttcattattctcaagaagatatttaggaaggtatttcctgatggtagtgaacgcaaagacgatcatcgtgtggctaatttagttcgtttagcc |
418 |
Q |
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| T |
4591034 |
aattcccttcattattctcaagaagatatttaggaaggtatttcctgatggtagtgaacgcaaagacgatcatcgtgtggctaatttagttcgtttagcc |
4591133 |
T |
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| Q |
419 |
tttg |
422 |
Q |
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|||| |
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| T |
4591134 |
tttg |
4591137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 4554488 - 4554548
Alignment:
| Q |
67 |
tgacattctcaggttagataaagtgatttgtgctagctatggtgggagcaacaacaacatc |
127 |
Q |
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| T |
4554488 |
tgacattcttaagttagataaagtgatttgtgctagctatggtgggagcaacaacaacatc |
4554548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 403
Target Start/End: Original strand, 4554705 - 4554824
Alignment:
| Q |
284 |
tctgttttaaacgatgttacaatgcttgagaaccaaattcccttcattattctcaagaagatatttaggaaggtatttcctgatggtagtgaacgcaaag |
383 |
Q |
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| T |
4554705 |
tctgttttaaatgatgtaaccatgcttgaaaattaaatccccttccttgttcttaagaaaatatataggaaggtattttctgttgatattgaaatcaaag |
4554804 |
T |
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| Q |
384 |
acgatcatcgtgtggctaat |
403 |
Q |
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| T |
4554805 |
atgatcatcgtgtagctaat |
4554824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 18521499 - 18521572
Alignment:
| Q |
293 |
aacgatgttacaatgcttgagaaccaaattcccttcattattctcaagaagatatttaggaaggtatttcctga |
366 |
Q |
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| T |
18521499 |
aacgatatcacaatgcttgagaaccaaatacccttcattgttctcaagaagttgtataggaaggttttccctga |
18521572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 14192651 - 14192688
Alignment:
| Q |
306 |
tgcttgagaaccaaattcccttcattattctcaagaag |
343 |
Q |
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| T |
14192651 |
tgcttgagaaccaaatacccttcattgttctcaagaag |
14192688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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