View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14236_low_24 (Length: 435)
Name: NF14236_low_24
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14236_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 1203111 - 1202717
Alignment:
| Q |
20 |
attgtgaggtcctaaaattaaaacacgaccttcaaaatgtttaaaacaattctnnnnnnnnnnnnnnnngaaatattatttggggtcattgtgtaatttt |
119 |
Q |
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| T |
1203111 |
attgtgaggtcctaaaattaaaacacgaccttcaaaatgtttaaaacaactctaaaaaaaaccaaaaaagaaatattatttggggtcattgtgtaatttt |
1203012 |
T |
|
| Q |
120 |
aatattttcatcatggacatgaaatgcctataaatacccttaacatttggaaggaaaaatgcaagcccttcattgaagtgttatatatcttctgaagctt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||| | || ||| | | ||| |||| | |
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| T |
1203011 |
aatattttcatcatggacatgaaatgcctataaatacccttcacatttggaatgaagaatgcaagtcctt---tcaattgtgttct--cttga-aagcat |
1202918 |
T |
|
| Q |
220 |
taattagtaaacaatata----atgacttctttccttttatttgtgtttgtttttgctagtcaagtgattggtggattcaatacaaagctaccacctcct |
315 |
Q |
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| T |
1202917 |
taattagtacacaatatatttaatgggtgctcttcttttatttatgtttgtttttgctaatcaggtgattggtggattcaatacaaagctaccacctcct |
1202818 |
T |
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| Q |
316 |
acctatggaaatgcaataaccattctcaacattgatggaggtggtattaaaggaattcttcctacggttcttcttcggaacttggaaaaagctcttcagg |
415 |
Q |
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| T |
1202817 |
acctatggaaatgcaataaccattctcaacattgatggaggtggtattaagggaattcttcctactgttcttcttcggaacttggaaaaagctcttcagg |
1202718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 96 - 416
Target Start/End: Complemental strand, 1255369 - 1255049
Alignment:
| Q |
96 |
tatttggggtcattgtgtaattttaatattttcatcatggacatgaa--atgcctataaatacccttaacatttggaaggaaaaatgcaagcccttcatt |
193 |
Q |
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| T |
1255369 |
tatttggggtcattgctttattttaatattttcatcatggacatgatgtatgcctataaatacccttaacacttggaaggaagaaagcaagcccttca-- |
1255272 |
T |
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| Q |
194 |
gaagtgttatatatcttctgaagctttaattagtaaacaatata--atgacttctttccttttatttgtgtttgtttttgctagtcaagtgattggtgga |
291 |
Q |
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|| ||| ||| |||| |||||| |||||||||| |||||||| ||| || |||| ||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
1255271 |
-aattgtgttatctctt-tgaagcattaattagtacacaatatataatggctgcttttcttttatttgtgtttatttttgctagtcaggtgattggtgga |
1255174 |
T |
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| Q |
292 |
ttcaatacaaagctaccacctcctacctatggaaatgcaataaccattctcaacattgatggaggtggtattaaaggaattcttcctacggttcttcttc |
391 |
Q |
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| T |
1255173 |
ttcaatacaaagctaccacctcctgcatatggaagtacaataaccatactcaacattgatggaggtggtattaagggaattcttcctacggttgttcttg |
1255074 |
T |
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| Q |
392 |
ggaacttggaaaaagctcttcaggt |
416 |
Q |
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| | || ||||| ||||||||||| |
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| T |
1255073 |
agcatttagaaaaggctcttcaggt |
1255049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 232 - 416
Target Start/End: Complemental strand, 1244501 - 1244317
Alignment:
| Q |
232 |
aatataatgacttctttccttttatttgtgtttgtttttgctagtcaagtgattggtggattcaatacaaagctaccacctcctacctatggaaatgcaa |
331 |
Q |
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||||||||| || ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | ||| |
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| T |
1244501 |
aatataatggctgctttccttttattaatgttcgtttttgctagtcaggtgattggtggattcaatacaaagctaccacctcctgcatatggaagtacaa |
1244402 |
T |
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| Q |
332 |
taaccattctcaacattgatggaggtggtattaaaggaattcttcctacggttcttcttcggaacttggaaaaagctcttcaggt |
416 |
Q |
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| T |
1244401 |
taaccatactcaacattgatggaggtggtattaagggaattcttcctacggttgttcttgagcatttagaaaaggctcttcaggt |
1244317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 245 - 377
Target Start/End: Complemental strand, 1280502 - 1280370
Alignment:
| Q |
245 |
ctttccttttatttgtgtttgtttttgctagtcaagtgattggtggattcaatacaaagctaccacctcctacctatggaaatgcaataaccattctcaa |
344 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
1280502 |
cttttcttttatttgtgcttgtttttgctagtcaagtgattggtggattcaatacaaagctaccacctcctgcctatggaaactcaataaccattctcag |
1280403 |
T |
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| Q |
345 |
cattgatggaggtggtattaaaggaattcttcc |
377 |
Q |
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| T |
1280402 |
cattgatggaggtggtattaaagggattattcc |
1280370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 245 - 418
Target Start/End: Complemental strand, 1230033 - 1229860
Alignment:
| Q |
245 |
ctttccttttatttgtgtttgtttttgctagtcaagtgattggtggattcaatacaaagctaccacctcctacctatggaaatgcaataaccattctcaa |
344 |
Q |
| |
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|||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||| |||||||| || | |||||| || |||||| |||||| | |
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| T |
1230033 |
ctttacttttatttctgtttgtttttgctaatcaggtgattggtggattcaataaaaaactaccaccgccgtcgtatggagatacaataagcattcttag |
1229934 |
T |
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| Q |
345 |
cattgatggaggtggtattaaaggaattcttcctacggttcttcttcggaacttggaaaaagctcttcaggtca |
418 |
Q |
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| T |
1229933 |
tattgatggaggtggtattaaaggaattcttcctacggttgttcttgaggacttggaacaggctcttcaggtca |
1229860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 1244613 - 1244522
Alignment:
| Q |
101 |
ggggtcattgtgtaattttaatattttcatcatggacatgaaatgcctataaatacccttaacatttggaaggaaaaatgcaagcccttcat |
192 |
Q |
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|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||| |||||| |
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| T |
1244613 |
ggggtcattgcgtaattttgatattttcatcatggactcgaaatgcctataaatacccttcccatttacaagaaaaaatgcaagctcttcat |
1244522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 364
Target Start/End: Original strand, 1298049 - 1298167
Alignment:
| Q |
246 |
tttccttttatttgtgtttgtttttgctagtcaagtgattggtggattcaatacaaagctaccacctcctacctatggaaatgcaataaccattctcaac |
345 |
Q |
| |
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|||| |||| |||||||| |||||||||||||| | |||| ||||||||| | | ||||||||||||| |||||||||||| ||| |||||||||| |
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| T |
1298049 |
tttcattttgtttgtgttcgtttttgctagtcagcttattgctggattcaacaaagagctaccacctccaacctatggaaatttaatcaccattctcagt |
1298148 |
T |
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| Q |
346 |
attgatggaggtggtatta |
364 |
Q |
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|||||||| |||||||||| |
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| T |
1298149 |
attgatggtggtggtatta |
1298167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 1280639 - 1280560
Alignment:
| Q |
113 |
taattttaatattttcatcatggacatgaa-atgcctataaatacccttaacatttggaaggaaaaatgcaagcccttca |
191 |
Q |
| |
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||||||| ||||||| ||||||||| | | ||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
1280639 |
taattttgatatttttatcatggacctcatgatgcctataaatacccttaacatttggaaggaagaatgcaaacccttca |
1280560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 1230177 - 1230087
Alignment:
| Q |
97 |
atttggggtcattgtgtaattttaatattttcatcatggacatgaaatgcctataaatacccttaacatttggaaggaaaaatgcaagccctt |
189 |
Q |
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||||||||| |||| ||||||| |||||| |||||||||||| |||||||||||||||||||| ||| ||||| | | ||||||||||||| |
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| T |
1230177 |
atttggggtaattgcgtaatttgaatattgtcatcatggacacaaaatgcctataaatacccttgaca--tggaatgtagaatgcaagccctt |
1230087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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