View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14236_low_25 (Length: 432)

Name: NF14236_low_25
Description: NF14236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14236_low_25
NF14236_low_25
[»] chr8 (12 HSPs)
chr8 (210-414)||(6804706-6804910)
chr8 (11-148)||(6804972-6805109)
chr8 (210-378)||(6617757-6617927)
chr8 (210-406)||(6791739-6791929)
chr8 (240-406)||(6650077-6650237)
chr8 (240-406)||(6730443-6730603)
chr8 (49-145)||(6791978-6792074)
chr8 (50-147)||(6592283-6592380)
chr8 (49-147)||(6617988-6618086)
chr8 (210-412)||(6592040-6592222)
chr8 (238-327)||(6620386-6620476)
chr8 (14-43)||(6592376-6592405)
[»] scaffold0470 (2 HSPs)
scaffold0470 (210-378)||(7075-7245)
scaffold0470 (49-147)||(7306-7404)
[»] scaffold0514 (2 HSPs)
scaffold0514 (210-406)||(4694-4884)
scaffold0514 (49-145)||(4549-4645)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 210 - 414
Target Start/End: Complemental strand, 6804910 - 6804706
Alignment:
Q  210 agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  6804910 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttgaattttaggtctctattttttgggttagaatgtgtagtttttaaattagttaa 6804811  T
Q  310 catctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaatattt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  6804810 catctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgcaatgctttccatgaaatgatgaaagtaattcgacaattttaatattt 6804711  T
Q  410 tgaac 414  Q
    |||||    
T  6804710 tgaac 6804706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 6805109 - 6804972
Alignment:
Q  11 cacagactatataaagtagcatcactatactatttatccactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6805109 cacagactatataaagtagcatcactatactatttatccactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatac 6805010  T
Q  111 actgttaagaggcagttaaaagtaagatttttcattat 148  Q
    |||||| |||||||||||||||||||||||||||||||    
T  6805009 actgttgagaggcagttaaaagtaagatttttcattat 6804972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 210 - 378
Target Start/End: Complemental strand, 6617927 - 6617757
Alignment:
Q  210 agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  6617927 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaa 6617828  T
Q  310 c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaa 378  Q
    |  |||||||| ||||||||| ||| ||||||||||| ||||||||| |||| | | ||||||||| ||||    
T  6617827 catatctcaatagggataaaaatagattggcacatttctatatctttttagaggcactgctttccatgaaa 6617757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 210 - 406
Target Start/End: Complemental strand, 6791929 - 6791739
Alignment:
Q  210 agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa 309  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  6791929 agttaggagatttgaacgaagatgattaaaatcctacaatgcagttggattttagttctctattttttgagttagaatgtgtagtttttaaattatttaa 6791830  T
Q  310 c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata 406  Q
    |  |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | ||||||||        ||||||||||||||||||||||||||    
T  6791829 catatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata 6791739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 6650237 - 6650077
Alignment:
Q  240 atcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaac--atctcaatggggataaaagtagcttgg 337  Q
    ||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||| ||||    
T  6650237 atcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattgg 6650138  T
Q  338 cacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata 406  Q
    ||||||| |||||||||||||| | | ||||||||        ||||||||||||||||||||||||||    
T  6650137 cacatttttatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata 6650077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 6730603 - 6730443
Alignment:
Q  240 atcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaac--atctcaatggggataaaagtagcttgg 337  Q
    ||||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||| ||||    
T  6730603 atcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaacatatctcaatagggataaaaatagattgg 6730504  T
Q  338 cacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata 406  Q
    ||||||| |||||||||||||| | | ||||||||        ||||||||||||||||||||||||||    
T  6730503 cacatttttatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata 6730443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 6792074 - 6791978
Alignment:
Q  49 cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcat 145  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  6792074 cactatagtagagttttagtttattaggtaaatatatgccaattgtgaagtttttgaaatacacggttgagaggcagttaaaggtaagatttttcat 6791978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 6592380 - 6592283
Alignment:
Q  50 actatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcatta 147  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||    
T  6592380 actatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcagttaaaggtaagatttttcatta 6592283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 6618086 - 6617988
Alignment:
Q  49 cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcatta 147  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |||||| |||||| ||||||||||||||||    
T  6618086 cactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggcggttaaaggtaagatttttcatta 6617988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 412
Target Start/End: Complemental strand, 6592222 - 6592040
Alignment:
Q  210 agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||              ||||||||||||||||| ||||||||||||||||    
T  6592222 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattt--------------ttgggttagaatgtgtaatttttaaattatttaa 6592137  T
Q  310 c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaatat 407  Q
    |  |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | ||||||||        || |||||||||||||||||||||||     
T  6592136 catatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttcc--------ataaaagtaattcgacaattttaatag 6592045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 6620476 - 6620386
Alignment:
Q  238 aaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaacatctcaat-ggggataaa 327  Q
    |||||||||||  | ||||||||| || |||||||| |||  |||||| || | ||||||||||  ||||||||||||||| |||||||||    
T  6620476 aaatcctatgatccggttgaattttagttctctattctttttgttagagtggggagtttttaaacgatttaacatctcaataggggataaa 6620386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 6592405 - 6592376
Alignment:
Q  14 agactatataaagtagcatcactatactat 43  Q
    ||||||||||||||||||||||||||||||    
T  6592405 agactatataaagtagcatcactatactat 6592376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 210 - 378
Target Start/End: Complemental strand, 7245 - 7075
Alignment:
Q  210 agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7245 agttaggagatttgaacgaagatgattaaaatcctatgatgcagttggattttagttctctattttttgggttagaatgtgtagtttttaaattatttaa 7146  T
Q  310 c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaa 378  Q
    |  |||||||| ||||||||| ||| ||||||||||| ||||||||| |||| | | ||||||||| ||||    
T  7145 catatctcaatagggataaaaatagattggcacatttctatatctttttagaggcactgctttccatgaaa 7075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 7404 - 7306
Alignment:
Q  49 cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcatta 147  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| |||||| |||||| ||||||||||||||||    
T  7404 cactatagtagagttttagtttattaggtaaatatataccaattgtgaagttttttaaatacacggttgagaggctgttaaaggtaagatttttcatta 7306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 210 - 406
Target Start/End: Original strand, 4694 - 4884
Alignment:
Q  210 agttaggagatttgaacgaagatgattaaaatcctatgaggcagttgaatttgaggtctctattttttgggttagaatgtgtagtttttaaattatttaa 309  Q
    ||||||||||||||||||||||||||||||||||||  | ||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  4694 agttaggagatttgaacgaagatgattaaaatcctacaatgcagttggattttagttctctattttttgagttagaatgtgtagtttttaaattatttaa 4793  T
Q  310 c--atctcaatggggataaaagtagcttggcacatttgtatatctttgtagacgaaatgctttccaagaaatgatgaaagtaattcgacaattttaata 406  Q
    |  |||||||| ||||||||| ||| ||||||||||| |||||||||||||| | | ||||||||        ||||||||||||||||||||||||||    
T  4794 catatctcaatagggataaaaatagattggcacatttctatatctttgtagaggcactgctttcc--------atgaaagtaattcgacaattttaata 4884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 4549 - 4645
Alignment:
Q  49 cactatagtagagttttagtttattaggtaaatatatcccgattgtgaagtttttgaaatacactgttaagaggcagttaaaagtaagatttttcat 145  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  4549 cactatagtagagttttagtttattaggtaaatatatgccaattgtgaagtttttgaaatacacggttgagaggcagttaaaggtaagatttttcat 4645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University